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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatcagcattttctttttataattgttttctttcatctcttgtaactgtatcctcaactgtttatttttccttttattttatttttgtttcagTTTTTCCAATCTCCTCATGCTTCATTGAGAAAGCTATCATTGGGTTCTGTAAATCAATACATTATGTTAATGCCTTCT

Basic information

species Glycine max
transcript GLYMA10G42960.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42960.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv03s0038g02830.t01 (Vitis vinifera), 3'ss of exon 3
gtaacatcagcattttctttttataattgttttctttcatctcttgtaactgtatcctcaactgtttatttttc--cttttattttatttttgtttca---gTTTTTCCAATCTCCTCATGCTTCATTGAGAAAGCTATCATTGGGTTCTGTAAATCAATACATTATGTTAATGCCTTCT
 |    | | | ||| ||| |  |  ||||||| | |  |    ||||  ||| |    |  | | ||||| ||  ||  ||   |  ||||||| ||   |||||| ||||| || ||||| ||| | |||||||| ||||||||||| ||||| || ||||||||||| |||||  ||
ctttttttaacttttgcttctgctttttgttttttct--ttctctgtatgtgtgtgtagatttatgtatttctcaactaataacctggttttgttccaacagTTTTTTCAATCACCACATGCCTCACTAAGAAAGCTTTCATTGGGTTCCGTAAACCAGTACATTATGTTGATGCCCGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19348256|gb|BM892788.1|BM892788
EST:     CAGGGTTAGCAGAACGCCCTATTAACATATTTCTTCCCAGATTGTTTCGG                         TTTTTCCAATCTCCTCATGCTTCATTGAGAAAGCTATCATTGGGTTCTGTA
genomic: CAGGGTTAGCAGAACGCCCTATTAACATATTTCTTCCCAGATTGTTTCGGgtaacatcag ... tttgtttcagTTTTTCCAATCTCCTCATGCTTCATTGAGAAAGCTATCATTGGGTTCTGTA
EST: gi|21888137|gb|BQ741350.1|BQ741350
EST:     CAGGGTTAGCAGAACGCCCTATTAACATATTTCTTCCCAGATTGTTTCGG                         TTTTTCCAATCTCCTCATGCTTCATTGAGAAAGCTATCATTGGGTTCTGTA
genomic: CAGGGTTAGCAGAACGCCCTATTAACATATTTCTTCCCAGATTGTTTCGGgtaacatcag ... tttgtttcagTTTTTCCAATCTCCTCATGCTTCATTGAGAAAGCTATCATTGGGTTCTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtaactgtatcctcaactgtttatttttccttttattttatttttgtttcagTTTTTCCAATCTCCTCATGCTTCATTGAGAAAGCTATCATTGGGTTCTGTAAATCAATACATTATGTTAATGCCTTCT
 ttgtaac  putative branch site (score: 2)
                   ctgtttatttttcctt  putative PPT
                 aactgtttatttttcc  TA-rich tract