1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gcttattataattttaacaaacaaaacttgacatagaaccttctcttgctttctcaattgagttgcgtcataaattttaaaatctgtttttctgttgcagGTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATAGAGAACCACTATATGCTAAGTTTCGACTTCGTGAACCATACAAGATGCCAA
species | Glycine max |
transcript | GLYMA10G42910.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGTCTTATTCAA GTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGEST: gi|208288560|gb|GE088787.1|GE088787
genomic: ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGTCTTATTCAAgtaagtcact ... tctgttgcagGTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCG
EST: ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGTCTTATTCAA GTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATAGA
genomic: ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGTCTTATTCAAgtaagtcact ... tctgttgcagGTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATAGA
ttgctttctcaattgagttgcgtcataaattttaaaatctgtttttctgttgcagGTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATAGAGAACCACTATATGCTAAGTTTCGACTTCGTGAACCATACAAGATGCCAA
tctgtttttctgtt CT-rich tract
ataaattttaaaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttattataattttaacaaacaaaacttgacatagaaccttctcttgctttctcaattgagttgcgtcataaattttaaaatctgtttttctgttgcagGTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATAGAGAACCACTATATGCTAAGTTTCGACTTCGTGAACCATACAAGATGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - aaacaaa
- - - - - - - - - - - - - cttgaca