1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagaacagtttgctatgttatgaatatttttaatgttactatcattttggcttttcccttttttgggatatggtaagacaaaaaagcttaatccatctttaggggttatgtaaacgttatctaacaattatgcattcattgcagGCCCCACAGACAAGTACAGTTCCTGCTTCAACCCCTCCAGCGTCAGTAGTTCCTCAAGCTTCTGCTCCTGCTCCTGCTCCTGCTCCTGCTGCAACTGGGG
species | Glycine max |
transcript | GLYMA10G42180.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACCAAG GCCCCACAGACAAGTACAGTTCCTGCTTCAACCCCTCCAGCGTCAGTAGTTEST: gi|192297148|gb|FG988244.1|FG988244
genomic: AGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACCAAGgtgagaacag ... ttcattgcagGCCCCACAGACAAGTACAGTTCCTGCTTCAACCCCTCCAGCGTCAGTAGTT
EST: AGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACCAAG GCCCCACAGACAAGTACAGTTCCTGCTTCAACCCCTCCAGCGTCAGTAGTTEST: gi|26056311|gb|CA799225.1|CA799225
genomic: AGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACCAAGgtgagaacag ... ttcattgcagGCCCCACAGACAAGTACAGTTCCTGCTTCAACCCCTCCAGCGTCAGTAGTT
EST: AGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCACCATCAACCAAG GCCCCACAGACAAGTACAGTTCCTGCTTCAACCCCTCCAGCGTCAGTAGTTEST: gi|298187376|gb|HO034525.1|HO034525
genomic: AGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACCAAGgtgagaacag ... ttcattgcagGCCCCACAGACAAGTACAGTTCCTGCTTCAACCCCTCCAGCGTCAGTAGTT
EST: AGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACCAAG GCCCCACAGACAAGTACAGTTCCTGCTTCAACCCCTCCAGCGTCGGTAGTT
genomic: AGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCTCCATCAACCAAGgtgagaacag ... ttcattgcagGCCCCACAGACAAGTACAGTTCCTGCTTCAACCCCTCCAGCGTCAGTAGTT
aatccatctttaggggttatgtaaacgttatctaacaattatgcattcattgcagGCCCCACAGACAAGTACAGTTCCTGCTTCAACCCCTCCAGCGTCAGTAGTTCCTCAAGCTTCTGCTCCTGCTCCTGCTCCTGCTCCTGCTGCAACTGGGG
atctaac putative branch site (score: 2)
ttatctaacaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaacagtttgctatgttatgaatatttttaatgttactatcattttggcttttcccttttttgggatatggtaagacaaaaaagcttaatccatctttaggggttatgtaaacgttatctaacaattatgcattcattgcagGCCCCACAGACAAGTACAGTTCCTGCTTCAACCCCTCCAGCGTCAGTAGTTCCTCAAGCTTCTGCTCCTGCTCCTGCTCCTGCTCCTGCTGCAACTGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC