1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atattttacaaaagaaagaaaagaatcacatgtgtgtttatattatctatagtagttgagaaattggtgaatagttgttgatgtgcttcattgctagcagGTTTGCTATTTGCTGTTCTGATAACTGGGGTCTTCACCGATGCAATAAAAAATGCAGTTGGCAGGCCTCGACCAGACTTCTTTTGGCGTTGTTTCCCCGA
species | Glycine max |
transcript | GLYMA10G41590.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATTTGCACCACAGTATTCTAG GTTTGCTATTTGCTGTTCTGATAACTGGGGTCTTCACCGATGCAATAAAAAEST: gi|151406804|gb|EV276619.1|EV276619
genomic: GATTTGCACCACAGTATTCTAGgtaacataac ... ttgctagcagGTTTGCTATTTGCTGTTCTGATAACTGGGGTCTTCACCGATGCAATAAAAA
EST: CTTCTATATGCGCAGGAGATGTGTTTATGATTTGCACCACAGTATTCTAG GTTTGCTATTTGCTGTTCTGATAACTGGGGTCTTCACCGATGCAATAAAAA
genomic: CTTCTATATGCGCAGGAGATGTGTTTATGATTTGCACCACAGTATTCTAGgtaacataac ... ttgctagcagGTTTGCTATTTGCTGTTCTGATAACTGGGGTCTTCACCGATGCAATAAAAA
tctatagtagttgagaaattggtgaatagttgttgatgtgcttcattgctagcagGTTTGCTATTTGCTGTTCTGATAACTGGGGTCTTCACCGATGCAATAAAAAATGCAGTTGGCAGGCCTCGACCAGACTTCTTTTGGCGTTGTTTCCCCGA
tgttgat putative branch site (score: 4)
cttcatt putative PPT
agaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattttacaaaagaaagaaaagaatcacatgtgtgtttatattatctatagtagttgagaaattggtgaatagttgttgatgtgcttcattgctagcagGTTTGCTATTTGCTGTTCTGATAACTGGGGTCTTCACCGATGCAATAAAAAATGCAGTTGGCAGGCCTCGACCAGACTTCTTTTGGCGTTGTTTCCCCGA
- - - - - - - -aagaaaa
- - - - - - - - - - - -aatcaca
- - - - - - - - - - - - - - - tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttca