1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacatttctgaaccttagaaggttttctctgtccttatttgcacatcacatcggaatactgaaacctattgctaaatgtatcagGCCTTCTATTTTCCGTACTCATTACTGCGGTGATGACTGATGCTATCAAGGATGCTGTTGGACGGCCAAGGCCAGACTTCTTCTGGCGTTGTTTCCCTGA
species | Glycine max |
transcript | GLYMA10G41580.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTACTATTTCATTCGTAAGGATGTCTATGACCTCCACCATGCTATACTGG GCCTTCTATTTTCCGTACTCATTACTGCGGTGATGACTGATGCTATCAAGGEST: gi|298191620|gb|HO039099.1|HO039099
genomic: TTACTATTTCATTCGTAAGGATGTCTATGACCTCCACCATGCTATACTGGgtacatttct ... aatgtatcagGCCTTCTATTTTCCGTACTCATTACTGCGGTGATGACTGATGCTATCAAGG
EST: TTACTATTTCATTCGTAAGGATGTCTATGACCTCCACCATGCTATACTGG GCCTTCTATTTTCCGTACTCATTACTGCGGTGATGACTGATGCTATCAAGGEST: gi|151412603|gb|EV282415.1|EV282415
genomic: TTACTATTTCATTCGTAAGGATGTCTATGACCTCCACCATGCTATACTGGgtacatttct ... aatgtatcagGCCTTCTATTTTCCGTACTCATTACTGCGGTGATGACTGATGCTATCAAGG
EST: TTACTATTTCATTCGTAAGGATGTCTATGACCTCCACCATGCTATACTGG GCCTTCTATTTTCCGTACTCATTACTGCGGTGATGACTGATGCTATCAAGGEST: gi|15287986|gb|BI471877.1|BI471877
genomic: TTACTATTTCATTCGTAAGGATGTCTATGACCTCCACCATGCTATACTGGgtacatttct ... aatgtatcagGCCTTCTATTTTCCGTACTCATTACTGCGGTGATGACTGATGCTATCAAGG
EST: ATTCGTAAGGATGTCTATGACCTCCACCATGCTATACTGG GCCTTCTATTTTCCGTACTCATTACTGCGGTGATGACTGATGCTATCAAGGEST: gi|213599342|gb|DB970332.1|DB970332
genomic: ATTCGTAAGGATGTCTATGACCTCCACCATGCTATACTGGgtacatttct ... aatgtatcagGCCTTCTATTTTCCGTACTCATTACTGCGGTGATGACTGATGCTATCAAGG
EST: TTACTATTTCATTCGTAAGGATGTCTATGACCTCCACCATGCTATACTGG GCCTTCTATTTTCCGTACTCATTACTGCGGTGATGACTGATGCTATCAAGG
genomic: TTACTATTTCATTCGTAAGGATGTCTATGACCTCCACCATGCTATACTGGgtacatttct ... aatgtatcagGCCTTCTATTTTCCGTACTCATTACTGCGGTGATGACTGATGCTATCAAGG
tgtccttatttgcacatcacatcggaatactgaaacctattgctaaatgtatcagGCCTTCTATTTTCCGTACTCATTACTGCGGTGATGACTGATGCTATCAAGGATGCTGTTGGACGGCCAAGGCCAGACTTCTTCTGGCGTTGTTTCCCTGA
tgctaaa putative branch site (score: 2)
taaatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatttctgaaccttagaaggttttctctgtccttatttgcacatcacatcggaatactgaaacctattgctaaatgtatcagGCCTTCTATTTTCCGTACTCATTACTGCGGTGATGACTGATGCTATCAAGGATGCTGTTGGACGGCCAAGGCCAGACTTCTTCTGGCGTTGTTTCCCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT