1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtattcttaagaagacacatttttttaaagaatttaagcatccttcacttttcacttcaaggtctaaacttgagtgggatgtagatttccattaatccatttgaagctgcaacttttggtttcttttcatttgcagTGGGCAGTGACAACAAGTGTAGATTATTCACTTGCACAACTTATTCAGGTTATTATTCTCCTTAGTACTGGTGGCAAAAATGGTGGTGGATATGAGGCCT
species | Glycine max |
transcript | GLYMA10G41560.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGCTGGTTCAATATTGTTGGCCAG TGGGCAGTGACAACAAGTGTAGATTATTCACTTGCACAACTTATTCAGGTTEST: gi|192299751|gb|FG990046.1|FG990046
genomic: TGGCTGGTTCAATATTGTTGGCCAGgtattcttaa ... tcatttgcagTGGGCAGTGACAACAAGTGTAGATTATTCACTTGCACAACTTATTCAGGTT
EST: TGGCTGGTTCAATATTGTTGGCCAG TGGGCAGTGACAACAAGTGTAGATTATTCACTTGCACAACTTATTCAGGTTEST: gi|10234703|gb|BE803591.1|BE803591
genomic: TGGCTGGTTCAATATTGTTGGCCAGgtattcttaa ... tcatttgcagTGGGCAGTGACAACAAGTGTAGATTATTCACTTGCACAACTTATTCAGGTT
EST: TGGCTGGTTCAATATTGTTGGCCAG TGGGCAGTGACAACAAGTGTAGATTATTCACTTGCACAACTTATTCAGGTT
genomic: TGGCTGGTTCAATATTGTTGGCCAGgtattcttaa ... tcatttgcagTGGGCAGTGACAACAAGTGTAGATTATTCACTTGCACAACTTATTCAGGTT
tagatttccattaatccatttgaagctgcaacttttggtttcttttcatttgcagTGGGCAGTGACAACAAGTGTAGATTATTCACTTGCACAACTTATTCAGGTTATTATTCTCCTTAGTACTGGTGGCAAAAATGGTGGTGGATATGAGGCCT
cattaat putative branch site (score: 3)
cttttggtttcttttc putative PPT
ttttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcttaagaagacacatttttttaaagaatttaagcatccttcacttttcacttcaaggtctaaacttgagtgggatgtagatttccattaatccatttgaagctgcaacttttggtttcttttcatttgcagTGGGCAGTGACAACAAGTGTAGATTATTCACTTGCACAACTTATTCAGGTTATTATTCTCCTTAGTACTGGTGGCAAAAATGGTGGTGGATATGAGGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA