1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcatttaaattaattgtgtaatgttatttgtaatttgttccttcgagttgcatctctatggccaagcttgattatctattcattttgatctgtgctgcagTTGATTGCTACTGCTGCTCTTTTTCTTACTGCAAAGTCAGAGGAAGCTCCACGTCATTTGAATAACGTATTGAGAACATCCAGTGAAATTTTATATAAAC
species | Glycine max |
transcript | GLYMA10G39550.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTGCCACCGTTTCTTTGT-CGAC-ATCACATGCTTGC-ATGATAGATTT T-GATTGCTACTGCTGCTCTTTTEST: gi|192311129|gb|FK004468.1|FK004468
genomic: TGTGCCACCGTTTCTTTGTTCGACGATCACATGCTTGCCATGATAGATTTgtgagttttc ... tgtgctgcagTTGATTGCTACTGCTGCTCTTTT
EST: TGTGCCACCGTTTCTTTGTTCGACAATCACATGCTTGCCATGATAGATTT T-GATTGCTACTGCTGCTC
genomic: TGTGCCACCGTTTCTTTGTTCGACGATCACATGCTTGCCATGATAGATTTgtgagttttc ... tgtgctgcagTTGATTGCTACTGCTGCTC
agttgcatctctatggccaagcttgattatctattcattttgatctgtgctgcagTTGATTGCTACTGCTGCTCTTTTTCTTACTGCAAAGTCAGAGGAAGCTCCACGTCATTTGAATAACGTATTGAGAACATCCAGTGAAATTTTATATAAAC
ttttgat putative branch site (score: 4)
attatctattcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatttaaattaattgtgtaatgttatttgtaatttgttccttcgagttgcatctctatggccaagcttgattatctattcattttgatctgtgctgcagTTGATTGCTACTGCTGCTCTTTTTCTTACTGCAAAGTCAGAGGAAGCTCCACGTCATTTGAATAACGTATTGAGAACATCCAGTGAAATTTTATATAAAC
- - - - - - - - - - - - - - - - - - gttcctt
- - - - - - - - - - - - - - - - - - - - - - - - tgcatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaagct