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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatttaaattaattgtgtaatgttatttgtaatttgttccttcgagttgcatctctatggccaagcttgattatctattcattttgatctgtgctgcagTTGATTGCTACTGCTGCTCTTTTTCTTACTGCAAAGTCAGAGGAAGCTCCACGTCATTTGAATAACGTATTGAGAACATCCAGTGAAATTTTATATAAAC

Basic information

species Glycine max
transcript GLYMA10G39550.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G39550.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0020g03060.t01 (Vitis vinifera), 3'ss of exon 3
----tcatttaaattaattgtgt-aatgttatttgtaatttgttccttcgagttgcatctctatggccaagcttgattatctattcattttgatctgtgctgcagTTGATTGCTACTGCTGCTCTTTTTCTTACTGCAAAGTCAGAGGAAGCTCCACGTCATTTGAATAACGTATTGAGAACATCCAGTGAAATTTTATATAAAC
    |   || |  | | | | | ||||   | ||| | |      | |     | |  ||   ||   ||| | ||||     | || | | | |||  |||||||||||||||||||| | ||||||||| |||||||||| |||||| | |  || | |||||| || ||| ||||| ||||  |||||||| |  |||| |
tctgtgccttgatgtgactttatgaatgcagtgtgttaatctaatttacagtccgtaattcagaggaatagcgttattac----tgatctggctttgt-ttgcagTTGATTGCTACTGCTTCCCTTTTTCTTGCTGCAAAGTCCGAGGAAACACAGCGCCCTTTGAACAATGTAGTGAGAGCATCTTGTGAAATTCTCCATAAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192311128|gb|FK004467.1|FK004467
EST:     TGTGCCACCGTTTCTTTGT-CGAC-ATCACATGCTTGC-ATGATAGATTT                         T-GATTGCTACTGCTGCTCTTTT
genomic: TGTGCCACCGTTTCTTTGTTCGACGATCACATGCTTGCCATGATAGATTTgtgagttttc ... tgtgctgcagTTGATTGCTACTGCTGCTCTTTT
EST: gi|192311129|gb|FK004468.1|FK004468
EST:     TGTGCCACCGTTTCTTTGTTCGACAATCACATGCTTGCCATGATAGATTT                         T-GATTGCTACTGCTGCTC
genomic: TGTGCCACCGTTTCTTTGTTCGACGATCACATGCTTGCCATGATAGATTTgtgagttttc ... tgtgctgcagTTGATTGCTACTGCTGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttgcatctctatggccaagcttgattatctattcattttgatctgtgctgcagTTGATTGCTACTGCTGCTCTTTTTCTTACTGCAAAGTCAGAGGAAGCTCCACGTCATTTGAATAACGTATTGAGAACATCCAGTGAAATTTTATATAAAC
                                     ttttgat  putative branch site (score: 4)
                         attatctattcatttt  TA-rich tract