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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctcatttggactcttaacaataaaaaaaaatatgttgagatgtagataacatttttaattattattttttcattatcttttgtatgccatgttttagCCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCTACTGCAAGAGAATTGCTCAGGCATAAGACTATAAACAAAGTTGTAATGTGTGACATAGAT

Basic information

species Glycine max
transcript GLYMA10G39440.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192331927|gb|FK026711.1|FK026711
EST:     TTTATCTACCATGAATGTCTTGTTCATCCGGCTCTGCTTCACAATCCTAG                         CCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCTACTGCAAGAGA
genomic: TTTATCTACCATGAATGTCTTGTTCATCCGGCTCTGCTTCACAATCCTAGgtacctcatt ... catgttttagCCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCTACTGCAAGAGA
EST: gi|151411311|gb|EV281122.1|EV281122
EST:     TTTATCTATCATGAATGTCTTGTTCATCCGGCTCTGCTTCACAATCCTAG                         CCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCTACTGCAAGAGA
genomic: TTTATCTACCATGAATGTCTTGTTCATCCGGCTCTGCTTCACAATCCTAGgtacctcatt ... catgttttagCCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCTACTGCAAGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagataacatttttaattattattttttcattatcttttgtatgccatgttttagCCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCTACTGCAAGAGAATTGCTCAGGCATAAGACTATAAACAAAGTTGTAATGTGTGACATAGAT
          ttttaat  putative branch site (score: 3)
     aacatttttaattatt  TA-rich tract