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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatcatgactcatgagtaatttgacctgctaattcttgttgagttattgagcaatctattttgtcctgacaagtgacaatttattattatcattattatagTCCCGACACATTTCTCCTACATCTAGAGCTGCTTAATTTCATGATTATTGCAATGTCAACTCAACTTCTCTGTGGGCCATCTCCTGGACCAAATGATGTG

Basic information

species Glycine max
transcript GLYMA10G38920.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38920.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0020g04100.t01 (Vitis vinifera), 3'ss of exon 3
---------gtatatcatgactcatgagtaatttgacctgcta-attc-ttgttgagttattgagcaatctattttgtcctgacaagtgacaatttattattatcattattatagTCCCGACACATTTCTCCTACATCTAGAGCTGCTTAATTTCATGATTATTGCAATGTCAACTCAACTTCTCTGTGGGCCATCTCCTGGACCAAATGATGTG
         ||||    |||        | ||||  || | || |||| |||||   ||| |     |||  | |  | || ||||    |      | |   || || |   ||||| || |||   ||||||||||  ||||| ||||| |||||| | || |  ||||||||||| ||||| | |||||||||||| |||||||| ||||||
gtaagttatgtattgtttgatatgcttcttattttcccagttatattcattgttctcttaattttatatcattctgatgctaacaaagtgcttccattcacattccttttccaagTCCTGAGACACACCTCCTACATCATGAGCTACTTAACTTCATGCTCATCGTGATGTCAACTCAGCTTCTTTCTGGGCCATCTCCAGGACCAAAAGATGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgagcaatctattttgtcctgacaagtgacaatttattattatcattattatagTCCCGACACATTTCTCCTACATCTAGAGCTGCTTAATTTCATGATTATTGCAATGTCAACTCAACTTCTCTGTGGGCCATCTCCTGGACCAAATGATGTG
                 tcctgac  putative branch site (score: 2)
                        aagtgacaatttatta  TA-rich tract