1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagctttgaatgctttttgtctctcttgttagttatgcattcccttctaacagttctaaattctagatgattatatgctttaaaattggtctttgtaagGAAGATGGGGGAGCTCAAAAAGCTGGTAAACGAAGGAAAGATAAAGTATATTGGCTTGTCTCAAGCTAGTCCTGACACTATAAAGAGAGCACATGCTGTT
species | Glycine max |
transcript | GLYMA10G38890.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACCTATACTATCAACATCGAGTTGACACTTCAGTGCCAATTGAAGACACC -A---TGGGGGAGCTCAAAAAGCTGGTAAACGAAGGAAAGATAAAGTATATEST: gi|9898893|gb|BE607861.1|BE607861
genomic: ACCTATACTATCAACATCGAGTTGACACTTCAGTGCCAATTGAAGACACCgtaagctttg ... tctttgtaagGAAGATGGGGGAGCTCAAAAAGCTGGTAAACGAAGGAAAGATAAAGTATAT
EST: ACCTATACTATCAACATCGAGTTGACACTTCAGTGCCAATTGAAGACACC GAAGATGGGGGAGCTCAAAAAGCTGGTAAACGAAGGAAAGATAAAGTATATEST: gi|4396293|gb|AI495290.1|AI495290
genomic: ACCTATACTATCAACATCGAGTTGACACTTCAGTGCCAATTGAAGACACCgtaagctttg ... tctttgtaagGAAGATGGGGGAGCTCAAAAAGCTGGTAAACGAAGGAAAGATAAAGTATAT
EST: ACCTATACTATCAACATCGAGTTGACACTTCAGTGCCAATTGAAGACACC -A---TGGGGGAGCTCAAAAAGCTGGTAAACGAAGGAGAGATAAAGTATATEST: gi|22525129|gb|BU083940.1|BU083940
genomic: ACCTATACTATCAACATCGAGTTGACACTTCAGTGCCAATTGAAGACACCgtaagctttg ... tctttgtaagGAAGATGGGGGAGCTCAAAAAGCTGGTAAACGAAGGAAAGATAAAGTATAT
EST: ACCTATACTATCAACATCGAGTTGACACTTCAGTGCCAATTGAAGACACC ----ATGGGGGAGCTCAAAAAGCTGGTAAACGAAGGAAAGATAAAGTATATEST: gi|192323154|gb|FK017035.1|FK017035
genomic: ACCTATACTATCAACATCGAGTTGACACTTCAGTGCCAATTGAAGACACCgtaagctttg ... tctttgtaagGAAGATGGGGGAGCTCAAAAAGCTGGTAAACGAAGGAAAGATAAAGTATAT
EST: ACCTATACTATCAACATCGAGTTGACACTTCAGTGCCAATTGAAGACACC -A---TGGGGGAGCTCAAAAAGCTGGTAAACGAAGGAAAGATAAAGTATATEST: gi|9899162|gb|BE608189.1|BE608189
genomic: ACCTATACTATCAACATCGAGTTGACACTTCAGTGCCAATTGAAGACACCgtaagctttg ... tctttgtaagGAAGATGGGGGAGCTCAAAAAGCTGGTAAACGAAGGAAAGATAAAGTATAT
EST: ACCTATACTATCAACATCGAGTTGACACTTCAGTGCCAATTGAAGACACC GAAGATGGGGGAGCTCAAAAAGCTGGTAAACGAAGGAAAGATAAAGTATAT
genomic: ACCTATACTATCAACATCGAGTTGACACTTCAGTGCCAATTGAAGACACCgtaagctttg ... tctttgtaagGAAGATGGGGGAGCTCAAAAAGCTGGTAAACGAAGGAAAGATAAAGTATAT
ttctaacagttctaaattctagatgattatatgctttaaaattggtctttgtaagGAAGATGGGGGAGCTCAAAAAGCTGGTAAACGAAGGAAAGATAAAGTATATTGGCTTGTCTCAAGCTAGTCCTGACACTATAAAGAGAGCACATGCTGTT
tctttgt CT-rich tract
atgattatatgcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctttgaatgctttttgtctctcttgttagttatgcattcccttctaacagttctaaattctagatgattatatgctttaaaattggtctttgtaagGAAGATGGGGGAGCTCAAAAAGCTGGTAAACGAAGGAAAGATAAAGTATATTGGCTTGTCTCAAGCTAGTCCTGACACTATAAAGAGAGCACATGCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT