Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgagaatttgccttctcattaatacactgagtgaagttcacttaggccactttgatatatgtgttgatgatcattttcattcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAG

Basic information

species Glycine max
transcript GLYMA10G38760.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38760.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G22890.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaattgagaatttgccttctcattaatacactgagtgaag-ttcacttaggccactttgatatatgtgttgatg-atcattttcattcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAG
                       |  ||||| |  |  ||| |||||         ||||| | ||||   |||  |     ||  |  |  | ||||||||||||||||||||||| || || || ||||| ||||| || || || |||||||| || ||| ||||||| || ||||| |||
----------------------gtatatacaattcgaaaagattcacactttttg-tttgaca-atgtagagatctaattccttggtgtaactgcagGTTGCTGCATATGACAAGACGCAAGGCAAGATGGCTTTCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAG

upper sequence: GLYMA10G38760.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G14680.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaattgagaatttgccttctcattaatacactgagtgaagttcacttaggccactttgatatatgtgtt--gatgatcattttcattcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAG
|||  |    |    ||   | ||    | |||  || |  |||  | |      |  | | | || |||  |||      ||||| |   |   |||||||||| || || ||||| || || || ||||| |||||||| || |||||| ||||||||||| ||||||| || ||||| |||
gtatattcatagaaaccgcataatactcaaacttggt-atcttccttcaaagatttaggctttttgagttctgatttctggtttcaattggt-gtagGTTGCTGCGTACGATAAGACACAAGGAAAGATGGCTTTCTTTGATCCCTCAAGGGCTCAGGACTTCTTGTTCATTTCTGGCACTAAG

upper sequence: GLYMA10G38760.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G43780.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaattgagaatttgccttctcattaatacactgagtgaagttcacttaggccactttgatatatgtgttgatgatcattttcattcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAG
    || |||     | ||   | |    |        ||  |   ||| |       | | || || |   || |    ||  |  ||  | |||| |||||||||||||| |||||||| |||||||| |||||||| ||||| ||| |||| |||||||| ||||||||||| || |||
---gttaagatcaatcattgctacttcctcttaatcgaaaacttctttaag-------ggtttaagtctcattgtttcggtttgt--atgaatagGTCGCTGCATATGACAAAACTCAGGGGAAAATGGCCTTCTTTGATCCTTCCAGGTCTCAAGACTTCCTCTTCATATCAGGAACCAAG

upper sequence: GLYMA10G38760.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0020g04210.t01 (Vitis vinifera), 3'ss of exon 3
gtaattgagaatttgcc-ttctcattaatacactgagtgaagttcacttaggccactt-tgatatatgtgttgatgatcattttcatt-catttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAG
|||  | |    |||    ||| || ||   ||| |     | |  | |     | || ||| || |||     | |  | ||    |  | || ||||||||||||||||| || ||||||  |||||||||||||||||| || |||||| |||| |||||||| |||||||| |||||||||
gtatataaactattgtagctcttatgaa---actcaaaattgctttcctgtttaatttatgaaatctgtaggattcacaagttgaggtataattgcagGTTGCTGCATATGATAAAACTCAGAATAAAATGGCATTCTTTGATCCCTCAAGGGCTCAAGACTTCCTCTTCATATCTGGCACAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254345330|gb|GR851599.1|GR851599
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|254331071|gb|GR842336.1|GR842336
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|6666428|gb|AW277946.1|AW277946
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|254338227|gb|GR849752.1|GR849752
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|21889613|gb|BQ742826.1|BQ742826
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|10709321|gb|BF009045.1|BF009045
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|16995771|gb|BM085143.1|BM085143
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|22540969|gb|BU090812.1|BU090812
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTGCAGG                         GTTGCTGCATATGACAAGACTCAGGGTGAAATGGGCATT
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGG-CATT
EST: gi|254348551|gb|GR852230.1|GR852230
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|254325528|gb|GR838409.1|GR838409
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|58017136|gb|CX703878.1|CX703878
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|23729086|gb|BU762628.1|BU762628
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|254325813|gb|GR838694.1|GR838694
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|58025399|gb|CX712140.1|CX712140
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|27424485|gb|CA936005.1|CA936005
EST:     GGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: GGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|9820710|gb|BE556220.1|BE556220
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|193430472|gb|FK393334.1|FK393334
EST:     AGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCAGTATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTC
genomic: AGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCA-TATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTC
EST: gi|298180582|gb|HO025669.1|HO025669
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|254348552|gb|GR852231.1|GR852231
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|17153084|gb|BM143017.1|BM143017
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTC
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTC
EST: gi|21286237|gb|BQ474108.1|BQ474108
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|7590597|gb|AW706346.1|AW706346
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|254325812|gb|GR838693.1|GR838693
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|48574760|gb|CO036064.1|CO036064
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|58024216|gb|CX710957.1|CX710957
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|298164007|gb|HO013652.1|HO013652
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|4287358|gb|AI441178.1|AI441178
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|21887637|gb|BQ740850.1|BQ740850
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|58024898|gb|CX711639.1|CX711639
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|6846352|gb|AW348642.1|AW348642
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|4397290|gb|AI496287.1|AI496287
EST:     ATTCTCCCTTTCAGGG                         GTTGCTGCATATG-CAAGACTCAGGGTAAAATGGCATTCTTTGA-CCTTC
genomic: ATTCTTCCTTTCA-GGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTC
EST: gi|15287732|gb|BI471623.1|BI471623
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|254347909|gb|GR854158.1|GR854158
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|19270042|gb|BM886298.1|BM886298
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|298182852|gb|HO031587.1|HO031587
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATCCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|254331648|gb|GR846065.1|GR846065
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|254335072|gb|GR844857.1|GR844857
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|10845078|gb|BF068249.1|BF068249
EST:     TATTGAGCATGGCACCCGGACTAGAGCGTCTAAACATTCTTCCTTTCACG                         GTTGCTGCATATGACAAGACTCAAGGTAANATGGCATTCTTTGACCCCTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|58019576|gb|CX706318.1|CX706318
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|16996659|gb|BM086031.1|BM086031
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|15202988|gb|BI425756.1|BI425756
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|8670259|gb|BE191366.1|BE191366
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|21638685|gb|BM139731.1|BM139731
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|26048808|gb|CA785261.1|CA785261
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|14259223|gb|BG882131.1|BG882131
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|9566071|gb|BE475509.1|BE475509
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCANGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|254343488|gb|GR857244.1|GR857244
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|254325494|gb|GR838375.1|GR838375
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|58015194|gb|CX701936.1|CX701936
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|254323346|gb|GR835847.1|GR835847
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|19938443|gb|BQ081722.1|BQ081722
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCT
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCT
EST: gi|15000949|gb|BI321763.1|BI321763
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|209704374|gb|BW678370.1|BW678370
EST:     TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: TATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
EST: gi|16349447|gb|BI975042.1|BI975042
EST:     CTAGAGCGTCTAAACATTCTTCCTTTCAGG                         GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA
genomic: CTAGAGCGTCTAAACATTCTTCCTTTCAGGgtaattgaga ... tcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcacttaggccactttgatatatgtgttgatgatcattttcattcatttacagGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAG
                          tgttgat  putative branch site (score: 4)
                                      ttttcattc  putative PPT
                                     attttcattcattta  TA-rich tract