Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttcaggacatcgtgagcttaagattctgctcattgattatttctaacatgttgcctttctggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGAG

Basic information

species Glycine max
transcript GLYMA10G38350.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38350.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G013600_T02 (Zea mays), 3'ss of exon 3
-----------------------------gtttgttcaggacatcgtgagcttaagattctgctcattgattatttctaacatgttgcctttctggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGAG
                             |||  | |  |   | | |    ||| |     ||       || | ||||  | | | ||||        |||| |||||||| || |||||||||||| | ||||| ||||||||||| ||||||
gtacacgagccttgcagataaggttaatagttaatactag-tgttgagcatgtaaaagctatcttgcaacctaatactaatctttagtctttt-------gcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGAG

upper sequence: GLYMA10G38350.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G013600_T01 (Zea mays), 3'ss of exon 3
-------gtttgttcaggacatcgtgagcttaagattctgctcattgattatttctaacatgttgcctttctggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGAG
       |||  | |  |   | | |    ||| |     ||       || | ||||  | | | ||||        |||| |||||||| || |||||||||||| | ||||| ||||||||||| ||||||
gttaatagttaatactag-tgttgagcatgtaaaagctatcttgcaacctaatactaatctttagtctttt-------gcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGAGAAACTGACCCTCTTGAG

upper sequence: GLYMA10G38350.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G086904_T01 (Zea mays), 3'ss of exon 3
gtttgttcaggacatcgtgagcttaagattctgctcattgattattt---ctaacatgttgcctttctggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGAG
    ||| |  |  | | | | | || ||       |   ||  |     |||| |  |  ||||  |  ||  |||| |||||||| || |||||||||||| | ||||| ||||||||||| ||||||
----gttaataattttgagtgttgaacatgtaaaaaacctatcttccaacctaatac-taaccttagtctttttgcagCATGAATGCTCCAGTCATGGTTGAGCTTGAGGGTGAAACTGACCCTCTTGAG

upper sequence: GLYMA10G38350.2 (Glycine max), 3'ss of exon 3
lower sequence: AT5G51940.1 (Arabidopsis thaliana), 3'ss of exon 3
-------gtttgtt-caggacatcgtgagcttaagattctgctca-ttgattatttctaac----atgttgcctttctggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGAG
         ||| | | |   |   |    ||||  ||    |   ||||  | ||  |      ||||||  |||  | |    ||| |||||||| ||||||||||||||| | ||||| || ||||| |||||||||
gtatggttcttgctactgagaacaatctttttaatgttaaattggcttgaaaagtttgagtcttaatgttgttttttggctgatacagCATGAATGCTCCTGTCATGGTTGAGCTAGAGGGTGAGACTGATCCACTTGAG

upper sequence: GLYMA10G38350.2 (Glycine max), 3'ss of exon 3
lower sequence: AT2G04630.1 (Arabidopsis thaliana), 3'ss of exon 3
---gtttgttcaggaca----tcgtgagcttaagattctgctcattgattatttctaac---atgttgcctttctggttga-gcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGAG
      |  | || |||    | ||    | |   ||  | |   |    |  | | |    ||||    ||  ||| |||  ||| |||||||| ||||| ||||||||||||||||| || ||||| |||||||||
gtcagctactgagaacaatctttgttgattaaccgtttagttggctcggaaagtttgattctatgtactgttgttggctgatacagCATGAATGCTCCTGTTATGGTTGAGTTGGAGGGTGAGACTGATCCACTTGAG

upper sequence: GLYMA10G38350.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0028g01210.t01 (Vitis vinifera), 3'ss of exon 3
--gtttgttcaggacatcgtgagcttaagattctgctcatt--gattatttctaacatgttgcctttct-----ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGAG
   ||  ||  |||     | |   |||  | ||| | |    | |  ||  |  |||  |   |||       | |||||||| |||||||| ||||| ||||||||||||||||| || |||||||||||||||
gttttattttcggaacctatcaatctaaagtcctgttgacctaggtggttgatgccataataatttttcatgtggattgagcagCATGAATGCGCCTGTGATGGTTGAGTTGGAGGGTGAGACTGACCCACTTGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315321|gb|GR825130.1|GR825130
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|17023174|gb|BM094208.1|BM094208
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|6913335|gb|AW394865.1|AW394865
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|298169366|gb|HO020726.1|HO020726
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|31457537|gb|CD399565.1|CD399565
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|192303951|gb|FG993837.1|FG993837
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|298187689|gb|HO031646.1|HO031646
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|26045616|gb|CA783150.1|CA783150
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|298165196|gb|HO011245.1|HO011245
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|24135619|gb|BU926129.1|BU926129
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|192316457|gb|FK008190.1|FK008190
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|151407894|gb|EV277709.1|EV277709
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|14258684|gb|BG881592.1|BG881592
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|19934747|gb|BQ079777.1|BQ079777
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|18039503|gb|BM307797.1|BM307797
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|192295900|gb|FG990910.1|FG990910
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|298192149|gb|HO036231.1|HO036231
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|16347285|gb|BI972880.1|BI972880
EST:     ACTAAGTATGAGCGTGCTAGGATTTTATGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTCGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|15814904|gb|BI787179.1|BI787179
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|254315322|gb|GR825131.1|GR825131
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|163926269|gb|EH039164.1|EH039164
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|6482337|gb|AW201604.1|AW201604
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|151403366|gb|EV273176.1|EV273176
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|7042283|gb|AW472177.1|AW472177
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         GATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|298199496|gb|HO042859.1|HO042859
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGG
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|10255441|gb|BE823207.1|BE823207
EST:     ACTAAGTATGAGCGTGCTANNATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|298181130|gb|HO022569.1|HO022569
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|22927456|gb|BU544595.1|BU544595
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTNGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|298197722|gb|HO045201.1|HO045201
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|298179996|gb|HO025211.1|HO025211
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|298198238|gb|HO039777.1|HO039777
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|19935890|gb|BQ080630.1|BQ080630
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTTTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|298168737|gb|HO009667.1|HO009667
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCGTGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
EST: gi|298183107|gb|HO028370.1|HO028370
EST:     ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAG                         TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA
genomic: ACTAAGTATGAGCGTGCTAGGATTTTAGGTACCCGTGCTCTTCAAATCAGgtttgttcag ... ggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttaagattctgctcattgattatttctaacatgttgcctttctggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGAG
                         ttctaac  putative branch site (score: 1)
                                      cctttctg  putative PPT
                attgattatttctaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgttcaggacatcgtgagcttaagattctgctcattgattatttctaacatgttgcctttctggttgagcagTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG