1 5' 3' | 2 5' 3' | 3 5' 3' |
gttggtctatgttctttgttaatattattatgcatacaatataatttataaatctgattggcattcttgaatggtaatttcttattggtagtggctattacttatgatatttttttccattgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAGTTTCACTAGATGGACCTGTGTATTGATGGACGAACTTTCATATTTTTG
species | Glycine max |
transcript | GLYMA10G37840.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|31456165|gb|CD398193.1|CD398193
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: TGAGGAAATGTCCTAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTAGTTACTCTTTTCTAEST: gi|19269736|gb|BM885992.1|BM885992
genomic: TGAGGAAATGTCC-AATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|213618406|gb|DB961579.1|DB961579
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|120494562|gb|EH222729.1|EH222729
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTTTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTTTTATTTACTCTTTTCTAEST: gi|4287211|gb|AI441157.1|AI441157
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|42722526|gb|CK768425.1|CK768425
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|15663379|gb|BI700750.1|BI700750
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|31471518|gb|CD413546.1|CD413546
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCCAAGAAGAAGCGTGAGGAAATGTCCCATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|21601409|gb|BQ611740.1|BQ611740
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|58022088|gb|CX708829.1|CX708829
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|151396437|gb|EV266314.1|EV266314
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGGTGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|7042161|gb|AW472055.1|AW472055
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|193467898|gb|FK430407.1|FK430407
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCGAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|18730445|gb|BM525882.1|BM525882
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: TGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|7795814|gb|AW781211.1|AW781211
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|16342062|gb|BI967657.1|BI967657
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|31561229|gb|CD487067.1|CD487067
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|151412115|gb|EV281927.1|EV281927
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|7232950|gb|AW568301.1|AW568301
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTATGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|7232862|gb|AW568214.1|AW568214
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|15664968|gb|BI702339.1|BI702339
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|4304256|gb|AI443593.1|AI443593
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|31474246|gb|CD416274.1|CD416274
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCCATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACCAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|213594778|gb|DB979530.1|DB979530
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|11689158|gb|BF596834.1|BF596834
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTNTTCTAEST: gi|120531718|gb|EH259851.1|EH259851
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|21889217|gb|BQ742430.1|BQ742430
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|207781828|gb|GD750921.1|GD750921
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: AGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|254341148|gb|GR854876.1|GR854876
genomic: AGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|24136180|gb|BU926690.1|BU926690
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|31456593|gb|CD398621.1|CD398621
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|58014661|gb|CX701403.1|CX701403
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAEST: gi|31307850|gb|CD393053.1|CD393053
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
EST: AGGAAATGTCACAAATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACATCATTTTCEST: gi|31311388|gb|CD396591.1|CD396591
genomic: AGGAAATGTC-C-AATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTAC-TC-TTTTC
EST: CGTGCCAAGAAGAAGCGTGAGGAAATGTCCCATGTTCTTAGGAAGATGAG GGCTGGTGGGGCTGGAGACCAGAAGAAATAAGTCTTATTTACTCTTTTCTA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGgttggtctat ... ttgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTA
taatttcttattggtagtggctattacttatgatatttttttccattgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAGTTTCACTAGATGGACCTGTGTATTGATGGACGAACTTTCATATTTTTG
tatttttttccatt CT-rich tract
tattacttatgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtctatgttctttgttaatattattatgcatacaatataatttataaatctgattggcattcttgaatggtaatttcttattggtagtggctattacttatgatatttttttccattgtatgcagGGCTGGTGGGGCTGGAGACAAGAAGAAATAAGTCTTATTTACTCTTTTCTAGTTTCACTAGATGGACCTGTGTATTGATGGACGAACTTTCATATTTTTG
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