1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgttcaatgtgtgtatgtgtattactgcgctcacgattgtctcaacctatataattgggtcttattgtttctttaaatgcacagactgagaagatgcggtagtaatcttaatcctgatgtttttatttaatataattttgcagGTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCACGTGAATCAAAGAAAGAAGGAAGAATTGTTAATGTTTCCTCAGAGGCTCA
species | Glycine max |
transcript | GLYMA10G37760.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGTCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACATAG GTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCACEST: gi|192304810|gb|FG996026.1|FG996026
genomic: CAGTCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACATAGgtatgttcaa ... aattttgcagGTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCAC
EST: CAGTCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACATAG GTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCACEST: gi|209724402|gb|BW658171.1|BW658171
genomic: CAGTCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACATAGgtatgttcaa ... aattttgcagGTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCAC
EST: CAGTCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACATAG GTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCACEST: gi|57575920|gb|CX548891.1|CX548891
genomic: CAGTCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACATAGgtatgttcaa ... aattttgcagGTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCAC
EST: TAAAGACAAAATTGAACTACAG-TTGCCCACAAATCACATAG GTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCACEST: gi|192304811|gb|FG996027.1|FG996027
genomic: TAAAGACAAAATTGAACTACAGTTTG-CCACAAATCACATAGgtatgttcaa ... aattttgcagGTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCAC
EST: CAGTCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACATAG GTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCAC
genomic: CAGTCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACATAGgtatgttcaa ... aattttgcagGTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCAC
agaagatgcggtagtaatcttaatcctgatgtttttatttaatataattttgcagGTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCACGTGAATCAAAGAAAGAAGGAAGAATTGTTAATGTTTCCTCAGAGGCTCA
taatcttaatcctgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttcaatgtgtgtatgtgtattactgcgctcacgattgtctcaacctatataattgggtcttattgtttctttaaatgcacagactgagaagatgcggtagtaatcttaatcctgatgtttttatttaatataattttgcagGTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCACGTGAATCAAAGAAAGAAGGAAGAATTGTTAATGTTTCCTCAGAGGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA