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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtgctaaatattttcaagtaaatattttatgccaattccactacatagatgctttaatgttattgcttgccatttcccccctttagGATGTTTCAAGGGAATTTAAGAGTACTCTTGAACGGGAGATTGGTCTTGATGACAATTTAAGTCCAACCCAGAACACATACAATTCCAACATACGCAATA

Basic information

species Glycine max
transcript GLYMA10G37690.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37690.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os11g37130.1 (Oryza sativa), 3'ss of exon 3
gttggtgctaaatattttcaagtaaatattttatgccaattccactacatagatgctttaatgttattgcttgccatttcccccctttagGATGTTTCAAGGGAATTTAAGAGTACTCTTGAACGGGAGATTGGTCTTGATGACAATTTAAGTCCAACCCAGAACACATACAATTCCAAC-ATACGCAATA---
|| || | | | | ||||| | | | ||| ||| || | ||| ||| || | | ||||||||||||||||| || | ||| ||||||||||| || ||||| |||||||| | || || | | | | | | || || || ||||
-------------gttggtttgtgacttgtctgatgtgattccttgatacatatg---taacgt-gtctctt----ttttccgcatatagGATGTTTCAAGGGAGTTCAGGAGCACTCTTGAACGAGAAATTGGACTTGATGA-AGTTC---CCCCATCAATGAACTACAGGCCCCCGACCATGAATAATAGTC

upper sequence: GLYMA10G37690.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv16s0050g00800.t01 (Vitis vinifera), 3'ss of exon 3
gttggtgctaaatattttcaagtaaa--tattttatgccaattccactacatagatgctttaatgttattgctt--gccatttccccccttt--agGATGTTTCAAGGGAATTTAAGAGTACTCTTGAACGGGAGATTGGTCTTGATGACAATTTAAGTCCAACCCAGAACACATACAATTCCAACATACGCAATA
|| | | || | | ||| | | || || || | | | | | | |||| | ||| || | || |||||| ||| || |||| ||||||| |||||||||||| || |||||| |||||||||| ||||||| | || |||| ||| || | ||||||| ||| | | ||
gtagatacttacaactttgagtttaacctacattgttctcaccacctttgaggaatgcct-gatgctactagttctaccatttttccctcttgtagGAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGATGAGATTTCAAGTTCAATACAAGATACATACAGGCCCAGAACAACTAACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401377|gb|EV271191.1|EV271191
EST:     ATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAAGAGCTTCAG                         GATGTTTCAAGGGAATTTAAGAGTACTCTTGAACGGGAGATTGGTCTTGAT
genomic: ATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAAGAGCTTCAGgttggtgcta ... ccccctttagGATGTTTCAAGGGAATTTAAGAGTACTCTTGAACGGGAGATTGGTCTTGAT
EST: gi|192321001|gb|FK013503.1|FK013503
EST:     ATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAAGAGCTTCAG                         GATGTTTCAAAGGAATTTAAGAGTACTCTTGAACGGGAGATTGGTCTTGAT
genomic: ATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAAGAGCTTCAGgttggtgcta ... ccccctttagGATGTTTCAAGGGAATTTAAGAGTACTCTTGAACGGGAGATTGGTCTTGAT
EST: gi|13482016|gb|BG511359.1|BG511359
EST:     ATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAAGAGCTTCAG                         GATGTTNCAAGGGAATTTAAGAGTACTCTTGAACGGGAGATTGGTCTTGAT
genomic: ATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAAGAGCTTCAGgttggtgcta ... ccccctttagGATGTTTCAAGGGAATTTAAGAGTACTCTTGAACGGGAGATTGGTCTTGAT
EST: gi|151404534|gb|EV274348.1|EV274348
EST:     ATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAAGAGCTTCAG                         GATGTTTCAAGGGAATTTAAGAGTACTCTTGAACGGGAGATTGGTCTTGAT
genomic: ATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAAGAGCTTCAGgttggtgcta ... ccccctttagGATGTTTCAAGGGAATTTAAGAGTACTCTTGAACGGGAGATTGGTCTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaattccactacatagatgctttaatgttattgcttgccatttcccccctttagGATGTTTCAAGGGAATTTAAGAGTACTCTTGAACGGGAGATTGGTCTTGATGACAATTTAAGTCCAACCCAGAACACATACAATTCCAACATACGCAATA
                    ctttaat  putative branch site (score: 4)
 ttgcttgccatttccc  putative PPT
 tttaatgttatt  TA-rich tract