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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttccgattcttcaattttgcattttttttttatgtgccatgatccaataaattatttcgacaattcaacaaagagaattttttataatctcattcattaaaacatgagcttgaattgttgctttgcagTCACACCATCGACCAAGAGAGGGACCGTTCGAGCTCAACGACGTTTTCGCGATAATTAACGCTGTCCCTGCGATCGCTCTTCTCTCATACGGTATTTTCC

Basic information

species Glycine max
transcript GLYMA10G37560.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37560.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv16s0050g01090.t01 (Vitis vinifera), 3'ss of exon 3
gtatgcttccga-----ttcttcaatttt-----gcattttttttttatgtgccatgatccaataaattatttcgacaattcaacaaagagaattttttataatctcattcattaaaacatgagcttgaattgttgctttgcagTCACACCATCGACCAAGAGAGGGACCGTTCGAGCTCAACGACGTTTTCGCGATAATTAACGCTGTCCCTGCGATCGCTCTTCTCTCATACGGTATTTTCC
|| | | ||| |     ||| ||| | ||      ||  | |  |   || |  ||  |||   | ||| | |||  ||   |||  || | ||||| | |    ||||||  ||||||            | |||  |||||||| ||||||  ||||||||| || || |||||||||||||| ||||||||||| |  || || || || || || || || ||||| || ||  | ||||
gttttcctcctactcctttcctcattcttcttaaacacctctggtcgctgagaaatcttcctggacattttctcggtaaccaaac--agtggattttctgtttgatcattc--taaaac-----------cttttggattgcagTCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCGATCACAAATGCAGTTCCAGCCATAGCCCTCCTCTCCTATGGCTTCTTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18733872|gb|BM527861.1|BM527861
EST:     GATGGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAG                         TCACACCATCGACCAAGAGAGGGACCGTTCGAGCTCAACGACGTTTTCGCG
genomic: GATGGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAGgtatgcttcc ... tgctttgcagTCACACCATCGACCAAGAGAGGGACCGTTCGAGCTCAACGACGTTTTCGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaattttttataatctcattcattaaaacatgagcttgaattgttgctttgcagTCACACCATCGACCAAGAGAGGGACCGTTCGAGCTCAACGACGTTTTCGCGATAATTAACGCTGTCCCTGCGATCGCTCTTCTCTCATACGGTATTTTCC
                                            ttgcttt  CT-rich tract
     tttttataatctcatt  TA-rich tract