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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttactgtttgtagcagttatctgtttgtcctcttttaacttggtttatcgttgttctgtttcttggttgaaagttccttactctttatgctgaaatgcatgcttgttgcagCGTGGCGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCCTGTGCCGCTACTGCTCTGAGTGCATTGCAAG

Basic information

species Glycine max
transcript GLYMA10G37100.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37100.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0166g00240.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtttactgtttgtagcagttatctgtttgtcctcttttaacttggtttatcgttgttctgtttcttggttgaaagttccttactctttatgctgaaatgcatgcttgttgcagCGTGGCGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCCTGTGCCGCTACTGCTCTGAGTGCATTGCAAG
|||||||      |||||  |   |      ||||||      |||||| |  ||  | ||  ||| | |   ||  | |  |||   ||| || |||           | |||||||||||  ||||||||||  |||||||||| ||||||||| |||  || |||||||| || |||||  ||||||| |||||||
gtaagtt----acttgtaataaacactccactgtcctaggcccacttggctagtcagt-tttcgttacatcactgtgattctctt---cttcatactg-----------ttttgcagCGTGGTAGAGATCCTCTTGTCCTTTGTTTCGTGGATTTTACAAGCCCAGCCTGTGCTGCAACTGCATTGAGTGCTTTGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192325611|gb|FK019467.1|FK019467
EST:     CTTTCGTTGGATATAGAGAAGTAAGACTTGTGAGCAAAGAATCCAAACAT                         CGTGGCGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCC
genomic: CTTTCGTTGGATATAGAGAAGTAAGACTTGTGAGCAAAGAATCCAAACATgtaagtttac ... cttgttgcagCGTGGCGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttcttggttgaaagttccttactctttatgctgaaatgcatgcttgttgcagCGTGGCGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCCTGTGCCGCTACTGCTCTGAGTGCATTGCAAG
                  tccttac  putative branch site (score: 2)
                         tctttat  TA-rich tract