1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatcctttttgttctcatttctcagttattgtttaataattgtaccatcacactttcaattatgctttgtcagcttcatttattttagtttagctattcaaattccttaatgctatttttagATATTTTTCGGCCTTTTGTTGGATATAGAGAAGTGAGACTTGTGAGCAAAGAATCCAAACAT
species | Glycine max |
transcript | GLYMA10G37090.1 |
intron # | 3 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: TTTATATGTTGAAGGTCTCCCATCTGACAGCACAAGAAGGGAAGTGGCTC ATATTTTTCGGCCTTTTGTTGGATATAGAGAAGTGAGACTTGTGAGCAAAGEST: gi|58020616|gb|CX707358.1|CX707358
genomic: TTTATATGTTGAAGGTCTCCCATCTGACAGCACAAGAAGGGAAGTGGCTCgtatcctttt ... ctatttttagATATTTTTCGGCCTTTTGTTGGATATAGAGAAGTGAGACTTGTGAGCAAAG
EST: TTTATATGTTGAAGGTCTCCCATCTGACAGCACAAGAAGGGAAGTGGCTC ATATTTTTCGGCCTTTTGTTGGATATAGAGAAGTGAGACTTGTGAGCAAAGEST: gi|58025090|gb|CX711831.1|CX711831
genomic: TTTATATGTTGAAGGTCTCCCATCTGACAGCACAAGAAGGGAAGTGGCTCgtatcctttt ... ctatttttagATATTTTTCGGCCTTTTGTTGGATATAGAGAAGTGAGACTTGTGAGCAAAG
EST: TTTATATGTTGAAGGTCTCCCATCTGACAGCACAAGAAGGGAAGTGGCTC ATATTTTTCGGCCTTTTGTTGGATATAGAGAAGTGAGACTTGTGAGCAAAGEST: gi|192297986|gb|FG993235.1|FG993235
genomic: TTTATATGTTGAAGGTCTCCCATCTGACAGCACAAGAAGGGAAGTGGCTCgtatcctttt ... ctatttttagATATTTTTCGGCCTTTTGTTGGATATAGAGAAGTGAGACTTGTGAGCAAAG
EST: TTTATATGTTGAAGGTCTCCCATCTGACAGCACAAGAAGGGAAGTGGCTC ATATTTTTCGGCCTTTTGTTGGATATAGAGAAGTGAGACTTGTGAGCAAAGEST: gi|58018483|gb|CX705225.1|CX705225
genomic: TTTATATGTTGAAGGTCTCCCATCTGACAGCACAAGAAGGGAAGTGGCTCgtatcctttt ... ctatttttagATATTTTTCGGCCTTTTGTTGGATATAGAGAAGTGAGACTTGTGAGCAAAG
EST: TTTATATGTTGAAGGTCTCCCATCTGACAGCACAAGAAGGGAAGTGGCTC ATATTNTTCGGCCTTTTGTTGGATATAGAGAAGTGAGACTTGTGAGCAAAG
genomic: TTTATATGTTGAAGGTCTCCCATCTGACAGCACAAGAAGGGAAGTGGCTCgtatcctttt ... ctatttttagATATTTTTCGGCCTTTTGTTGGATATAGAGAAGTGAGACTTGTGAGCAAAG
tgtcagcttcatttattttagtttagctattcaaattccttaatgctatttttagATATTTTTCGGCCTTTTGTTGGATATAGAGAAGTGAGACTTGTGAGCAAAGAATCCAAACAT
ttccttaat putative branch site
ctattttt putative PPT
atttattttagtttag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcctttttgttctcatttctcagttattgtttaataattgtaccatcacactttcaattatgctttgtcagcttcatttattttagtttagctattcaaattccttaatgctatttttagATATTTTTCGGCCTTTTGTTGGATATAGAGAAGTGAGACTTGTGAGCAAAGAATCCAAACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA