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gtaagtcatcaatatgtgatttggtgtgtcttgaaaactaagggttttttttttttttttgtaagcgtctaattgaaaactaaaggtatataatatataatatatagtatgtgcttttgttgatgatggtgagatatatttttccagTGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAAGCTTCTAAGCGTGGAAA
species | Glycine max |
transcript | GLYMA10G36990.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCTTTCCAATGATGTCTTTATCAAGGCTTTGGTCAGCAGTGGACGAACA TGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAAGCTTCTEST: gi|151406217|gb|EV276032.1|EV276032
genomic: TCCTTTCCAATGATGTCTTTATCAAGGCTTTGGTCAGCAGTGGACGAACAgtaagtcatc ... atttttccagTGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAAGCTTCT
EST: TCCTTTCCAATGATGTCTTTATCAAGGCTTTGGTCAGCAGTGGACGAACA TGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAAGCTTCTEST: gi|17964404|gb|BM271140.1|BM271140
genomic: TCCTTTCCAATGATGTCTTTATCAAGGCTTTGGTCAGCAGTGGACGAACAgtaagtcatc ... atttttccagTGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAAGCTTCT
EST: TCCTTTCCAATGATGTCTTTATCAAGGCTTTGGTCAGCAGTGGACGAACA TGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAAGCTTCTEST: gi|120532042|gb|EH260175.1|EH260175
genomic: TCCTTTCCAATGATGTCTTTATCAAGGCTTTGGTCAGCAGTGGACGAACAgtaagtcatc ... atttttccagTGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAAGCTTCT
EST: TCCTTTCCAATGATGTCTTTATCAAGGCTTTGGTCAGCAGTGGACGAACA TGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAAGCTTCTEST: gi|213608834|gb|DB957198.1|DB957198
genomic: TCCTTTCCAATGATGTCTTTATCAAGGCTTTGGTCAGCAGTGGACGAACAgtaagtcatc ... atttttccagTGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAAGCTTCT
EST: TCCTTTCCAATGATGTCTTTATCAAGGCTTTGGTCAGCAGTGGACGAACA TGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAAGCTTCTEST: gi|17518569|gb|BM187611.1|BM187611
genomic: TCCTTTCCAATGATGTCTTTATCAAGGCTTTGGTCAGCAGTGGACGAACAgtaagtcatc ... atttttccagTGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAAGCTTCT
EST: TCCTTTCCAATGATGTCTTTATCAAGGCTTTGGTCAGCAGTGGACGAACA TGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAAGCTTCT
genomic: TCCTTTCCAATGATGTCTTTATCAAGGCTTTGGTCAGCAGTGGACGAACAgtaagtcatc ... atttttccagTGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAAGCTTCT
atatataatatatagtatgtgcttttgttgatgatggtgagatatatttttccagTGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAAGCTTCTAAGCGTGGAAA
tgttgat putative branch site (score: 4)
tatttttcc putative PPT
taatatatagtatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcatcaatatgtgatttggtgtgtcttgaaaactaagggttttttttttttttttgtaagcgtctaattgaaaactaaaggtatataatatataatatatagtatgtgcttttgttgatgatggtgagatatatttttccagTGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAAGCTTCTAAGCGTGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG