1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...actatatgctgtataattatgcatctggcaattttatgttcctgtcagtcattgtctttgggacctgttttggactcataagtcagttctgctcctgcagCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACAAGAAGAACAACTTGCACAGAGTATGTTATATCAATGGATGCAGATAACATATC
species | Glycine max |
transcript | GLYMA10G36940.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTGGCCTTAGCCCTG CCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACAAGAAEST: gi|6719177|gb|AW306824.1|AW306824
genomic: GAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTGGCCTTAGCCCTGgtaagtttca ... gctcctgcagCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACAAGAA
EST: GAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTGGCCTTAGCCCTG CCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACAAGAAEST: gi|192301224|gb|FG988989.1|FG988989
genomic: GAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTGGCCTTAGCCCTGgtaagtttca ... gctcctgcagCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACAAGAA
EST: GAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTGGCCTTAGCCCCG CCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACAAGAAEST: gi|254323676|gb|GR840317.1|GR840317
genomic: GAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTGGCCTTAGCCCTGgtaagtttca ... gctcctgcagCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACAAGAA
EST: GAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTGGCCTTAGCCCTG CCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACAAGAAEST: gi|20449612|gb|BQ253736.1|BQ253736
genomic: GAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTGGCCTTAGCCCTGgtaagtttca ... gctcctgcagCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACAAGAA
EST: CACCTCTTCCTTGGCCTTAGCCCTG CCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACAAGAAEST: gi|21678447|gb|BQ630798.1|BQ630798
genomic: CACCTCTTCCTTGGCCTTAGCCCTGgtaagtttca ... gctcctgcagCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACAAGAA
EST: GAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTGGCCTTAGCCCTG CCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACAAGAAEST: gi|6341681|gb|AW164505.1|AW164505
genomic: GAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTGGCCTTAGCCCTGgtaagtttca ... gctcctgcagCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACAAGAA
EST: GAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTGGCCTTAGCCCTG CCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACAAGAAEST: gi|23725761|gb|BU760845.1|BU760845
genomic: GAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTGGCCTTAGCCCTGgtaagtttca ... gctcctgcagCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACAAGAA
EST: GAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTGGCCTTAGCCCTG CCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACAAGAA
genomic: GAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTGGCCTTAGCCCTGgtaagtttca ... gctcctgcagCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACAAGAA
cagtcattgtctttgggacctgttttggactcataagtcagttctgctcctgcagCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACAAGAAGAACAACTTGCACAGAGTATGTTATATCAATGGATGCAGATAACATATC
ttctgctcct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actatatgctgtataattatgcatctggcaattttatgttcctgtcagtcattgtctttgggacctgttttggactcataagtcagttctgctcctgcagCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACAAGAAGAACAACTTGCACAGAGTATGTTATATCAATGGATGCAGATAACATATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT