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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttcatttgttttcataaaaacgtatagaaatatatggaaacacatgtcaaattactttctattaaatccaatgaaattgatatttatacttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAG

Basic information

species Glycine max
transcript GLYMA10G36880.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36880.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os03g58050.1 (Oryza sativa), 3'ss of exon 3
cttcatttgttttcataaaaacgtatagaaatatatggaaacacatg---tcaaatt-actttctatta-aatccaatgaaattgatatttatacttgc---atgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAG
     ||||||  |  |   |   ||    || ||| | | | | |    | |  || ||  ||| |||   ||  || |   |     | |    | |    | ||||||||| |||||| |||| ||||||||||| || ||||| ||||| ||||| |||||||| || ||  | |||||||| ||||| |||||||||||||||
----gtttgttacc-caggcattcatc---atgtattggatccctttaacttatgttgaccatcttttacgctctcatcacccttgcgctcacttgttccttgtacagGAACCACCGTGGTCTGAGGCACTACTGGGGCCTCCGTGTGCGTGGGCAGCACACCAAGACAACCGGAAGGAGGGGTAAGACTGTCGGTGTGTCCAAGAAG

upper sequence: GLYMA10G36880.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os07g07719.1 (Oryza sativa), 3'ss of exon 2
-cttcatttgttttcataaaaacgtatag--aaatatatggaaacacat-gtcaaattactttctattaaatc-caatgaaattgatatttatacttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAG
      ||||   |  |||   | |   |  || ||  || |  | ||  ||  ||  | || || ||  ||  || |  || |    ||| || ||     ||||||||| |||||| |  | |||||||||||||| ||||| ||||| ||||| |||||||| |||||  | ||||| || ||||| ||||| |||||||||
cgaggctttggactgctaacttctttgggctaattaattgcattctcagagttgaacaaattgctctttgatttcatttgaactaccttttgtaatt-----cagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGTGGTCAGCACACCAAGACTACTGGCAGGAGGGGAAAGACTGTCGGTGTCTCCAAGAAG

upper sequence: GLYMA10G36880.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os07g07770.1 (Oryza sativa), 3'ss of exon 2
----cttcatttgttttcataaaaacgtatagaaatatatggaaacacatgtcaaattactttctattaaatccaatgaaattgatatttatacttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAG
         ||||| |||  | |   | | | |      |   |   ||| |  || ||||  | ||||| |  |||  ||   |||| | |   |  || ||||||||| |||||| |  | |||||||||||||| ||||| ||||| ||||| |||||||| |||||  | ||||| || ||||| ||||| |||||||||
cgagtactttttgtattctcacagttgaacaaattgcgctttgatttcat-ttgaactacta-cgattaattgtaatcgaacc-atatctttttgta-attcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGTGGTCAGCACACCAAGACTACTGGCAGGAGGGGAAAGACTGTCGGTGTCTCCAAGAAG

upper sequence: GLYMA10G36880.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os07g07709.1 (Oryza sativa), 3'ss of exon 3
--cttcatttgttttcataaaaacgtatagaaatatatggaaacacatgtcaaattactttctattaaatccaatgaaattgatatttatacttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAG
   ||| ||    ||  |   ||        | ||||   |  |  |  | |||  |   |    ||| |  |||  || |  |    ||  |   |||||||||||| |||||| |  | |||||||||||||| ||||| || || ||||| |||||||| |||||  | ||||| || ||||| ||||| |||||||||
tgtttctttcagcttactcccaataatctagattataataatcccaagctgaaagaaacatggcctaagttgaatcgaactact--ccattttgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCACACCAAGACTACTGGCAGGAGGGGAAAGACTGTCGGTGTCTCCAAGAAG

upper sequence: GLYMA10G36880.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G178341_T02 (Zea mays), 3'ss of exon 2
cttcatttgttttcataaaaacgtatagaaatatatg--gaaacacat-gtcaaattactttcta--ttaaatccaatgaaattgatatttatacttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAG
    |   ||   | | |||   || |    | ||||  | |   ||| ||  |  || || |||  ||||     |  | |||   || | |  | |  ||||||||||| |||||| || | ||||||||||| || ||||| ||||||||||| ||||||||||||||  |  | || |||||||||||||| |||||||||
---tagccgtggccttcaaattttaaatttttgtatgctgcatgtcattgtttatgtagttcctaagttaacagtcac-atattcgcatct-tcttggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCACACCAAGACCACTGGCAGGCGCGGAAAAACTGTTGGTGTCTCCAAGAAG

upper sequence: GLYMA10G36880.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G130544_T02 (Zea mays), 3'ss of exon 3
cttcatt-tgttttcataaaaacgtatagaaatatatggaaacacatgtcaaattactttctattaaatccaatgaaattgatatttatacttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAG
 | |||| ||   |    | |   || |    |  || || | | |  | |  ||| | ||     |  |||        ||| ||||   |    ||||||||||| |||||| || | ||||||||||| || || || ||||||||||| |||||||| |||||| |  | || || || |||||||| |||||||||
gtccattgtgcactgtctacactctacattcttgcatcgaga-atacatgatcttattatcgtagtagcccagaccttcagatttttaatttgttctgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGCGTCCGTGGCCAGCACACCAAGACTACTGGTAGGCGTGGAAAGACCGTTGGTGTCTCCAAGAAG

upper sequence: GLYMA10G36880.2 (Glycine max), 3'ss of exon 3
lower sequence: AT4G09800.1 (Arabidopsis thaliana), 3'ss of exon 3
cttcatttgttttcataaaaacgtatagaaatatatggaaacacatgtcaaattact-ttctattaaatccaatgaaattgatattt--atacttg-----catgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAG
               |||| ||  | |  || | ||  |  |  || |    | ||  ||  || |||     ||| | || |  ||  ||  |||          || ||||| ||||||||||| || ||||||||||| |||||  | || || || |||||||| |||||||| || || || ||||||||||| || ||||||
--------------gtaaatacaaaaaccaacagata-attcttatctttgttcacaattgcataaaacatggtgataatgtttctttcatgtttgacaaatggatagAAACCACCGTGGTTTGAGGCATTACTGGGGTCTCCGTGTCAGAGGACAACACACCAAGACTACTGGTCGCAGAGGAAAGACTGTTGGTGTCTCAAAGAAG

upper sequence: GLYMA10G36880.2 (Glycine max), 3'ss of exon 3
lower sequence: AT1G22780.1 (Arabidopsis thaliana), 3'ss of exon 3
----cttcatt--tgttttcataaaaacgtatagaaatatatggaaacacatgtcaaattactttctattaaatccaatgaaattgatatttatacttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAG
     || | |  ||  | | |     |           | ||  ||   || |  ||   |||| | ||  |   | ||| ||||  | |   |  || |  ||| |||||||||||| |||| |||||||||||||| ||||||||||| ||||| ||||| ||||| || ||  | || || ||||||||||| |||||||||
aatgatttactgatgcatcctttgtttctctcttgttgttctgataatcgatatagaa---ctttgt-ttgtactgactgagattgtcactgtaa--tgtaaacagAAACCATCGTGGTCTGAGGCACTACTGGGGTCTCCGTGTACGTGGACAGCACACCAAAACCACCGGACGCCGTGGAAAGACTGTTGGTGTTTCCAAGAAG

upper sequence: GLYMA10G36880.2 (Glycine max), 3'ss of exon 3
lower sequence: AT1G34030.1 (Arabidopsis thaliana), 3'ss of exon 3
cttcatttgttttcataaaaacgtatagaaatatatggaaacacatgtcaaat-tactttctattaaatccaatgaaattgatatt---tatacttgcat---gcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAG
       |     ||| |     |   ||     ||   |  |||||  |||| |    ||||     |  ||| |   || | ||   | | ||| ||     ||| |||||||||||| ||||||| ||||||||||| ||||| ||||| || || |||||||| |||||||| || || || |||||||||||||| ||||||
------gtaaacccattagtcatttctgatcctaatcatataacatgataaatatgtcctctaggggctttaataatggtggttttgcattttcttacaatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAG

upper sequence: GLYMA10G36880.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0072g00060.t01 (Vitis vinifera), 3'ss of exon 4
----cttcatttgttttcataaaaacgtatagaaatatatggaaacacatgtcaaattactttctattaaatccaatgaaattgatatttatacttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAG
    |  | | |   ||  |           |   |  ||| ||    | |  |  |        || | |     |  |  | || || |||||   |||||||||||| |||||| |||| ||||||||||| || ||||| || |||||||| ||||||||||| |||||||| || || ||||||||||| || ||||||
agggcaccgtgtccattgtttgtggtagtaggttgtgaatg-aagtttaggctaggtggggaaacatgatact---ttcagctaatcttgatactgttatgcagGAACCACCGTGGTCTGAGGCACTACTGGGGCCTCCGTGTTCGCGGCCAGCACACCAAGACCACAGGTCGTAGAGGAAAGACTGTTGGTGTCTCTAAGAAG

upper sequence: GLYMA10G36880.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S14_433V6.1 (Physcomitrella patens), 3'ss of exon 3
cttcatttgttttcataaaaacgtatagaaatatatggaaa-cacatgtcaaattactttctattaaatccaatgaaattg-atatttatacttg----catgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAG
      |  |    || |||     |||| || | | |    | |||     | ||  |       | |    |   |||| | ||     ||||    ||||||||||||| |||||| |  | |||||||||||  | ||||||||||| || || |||||||| |||||  |  | |||| ||| || || ||||||||||||
------tcatggatatgaaatgtattagatatttttaggcttcgcatcatgcagtatgtgagggcgattatggtcttattggagatgccgtcttgtgatcatgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGTCAACACACCAAGACAACTGGAAGACGTGGTAGAACCGTCGGAGTGTCCAAGAAG

upper sequence: GLYMA10G36880.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 3
cttcatttgttttcataaaaacgtatagaaatatatggaaacacatgtcaaattactttctattaaatccaatgaaattgatatttatacttgcat-----gcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAG
     ||| || |  ||   |  | |       ||   |  |   | |    |   ||  || | | || ||||    ||| ||  ||    || |     |||||||||| |||||| |  | |||||||||||  | ||||||||||| ||||| |||||||| ||||| ||| | ||    || ||||||||||| ||||||
----tttttttcttgtatggatct-ttttttcgtacacattcttttcttttgtagattcttaattactctaatgttgctgaaatcaatggccgcttatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCACACCAAGACAACTGGACGTCGTGGACGGACCGTTGGTGTGTCTAAGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208250257|gb|GE048232.1|GE048232
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|298172960|gb|HO019944.1|HO019944
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|7640426|gb|AW734728.1|AW734728
EST:     GCTCTTGATATGAAGCTCANGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|298181489|gb|HO022928.1|HO022928
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|14125249|gb|BG789687.1|BG789687
EST:     GCTCTTGATATGAAGCTCANGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|14258630|gb|BG881538.1|BG881538
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGNGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|9204988|gb|BE331212.1|BE331212
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|13791010|gb|BG653601.1|BG653601
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|17963641|gb|BM270388.1|BM270388
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|298173840|gb|HO017176.1|HO017176
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|21887134|gb|BQ740347.1|BQ740347
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|14990641|gb|BI316314.1|BI316314
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|9564231|gb|BE473740.1|BE473740
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|298177307|gb|HO027088.1|HO027088
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|7042042|gb|AW471936.1|AW471936
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|298175365|gb|HO016024.1|HO016024
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|192303402|gb|FG997446.1|FG997446
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTTTTTGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|298197918|gb|HO039457.1|HO039457
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|208038023|gb|GD834077.1|GD834077
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|23733952|gb|BU765192.1|BU765192
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCAAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCATGTACATGGACAGAA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|19935035|gb|BQ080065.1|BQ080065
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|298188760|gb|HO035453.1|HO035453
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|192328687|gb|FK023173.1|FK023173
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|4298494|gb|AI442769.1|AI442769
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAT                         GAACCATCGTTGGTTCGAGACACGTACTGGGGTCTTCGTGTACGTGGCCAG
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGT-GGTTTGAGACAC-TACTGGGGTCTTCGTGTACGTGGCCAG
EST: gi|151401834|gb|EV271647.1|EV271647
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|298192674|gb|HO033108.1|HO033108
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|298185842|gb|HO031003.1|HO031003
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|48575205|gb|CO036287.1|CO036287
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTAC
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTAC
EST: gi|21602043|gb|BQ612374.1|BQ612374
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCA
EST: gi|48575743|gb|CO036554.1|CO036554
EST:     GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAG                         GAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTAC
genomic: GCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaaga ... ttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcaaattactttctattaaatccaatgaaattgatatttatacttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAG
                              aattgat  putative branch site (score: 4)
               tattaaatccaatgaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cttcatttgttttcataaaaacgtatagaaatatatggaaacacatgtcaaattactttctattaaatccaatgaaattgatatttatacttgcatgcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG