Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaagctaatagtattgaattctttaactattacatgaaactttctcttacttgttatagcatcatttaattatctaactatatttcttttttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCACGTGGTCT

Basic information

species Glycine max
transcript GLYMA10G36780.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os11g06750.1 (Oryza sativa), 3'ss of exon 3
tgaagctaatagtattgaattctttaactattacatgaaactttctcttacttgttatagcatcatttaatt---atctaactatatttcttttttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCACGTGGTCT
    ||   |||    || ||   || |||  || | |   ||  ||| | |    |||  |      |  |   | ||    || |||||  |   | ||||| || ||||||||||| || |||||| ||||||| ||||||||||| ||||| || ||  |||||||  ||||||  |||||||| |||||||||||  |
--tggcctttagccaagactttaata-ctaagactttagtattcatctgaatatgcatactactgaagagatttaaccttgtcatttttctaatgcttttcagAACTCCACAAGAAGGAGACCTGTGAGGCTGTTACCATTATTGAGACACCTCCTATTGTCGTTGTTGGACTTGTGGCCTATGTGAAGACTCCACGTGGCTT

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os12g07010.1 (Oryza sativa), 3'ss of exon 3
tgaagctaatagtattgaattctttaactattacatgaaactttctcttacttgttatag-catcatttaattat-ctaactatatttcttttttatat-cagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCACGTGGTCT
                       | |  |  |             || |  |  ||  ||  ||   || |  ||  ||||   || | ||    || | ||||||| |||||||||||||| || ||| ||||||| || || |||||||||||  | || ||||||||  | ||||  ||||| || || || ||||| ||
----------------------gtaagttgctctgcatcttgcattcgtgttcattggaggtatgccttgaacatattaacaccatatgttgacaatgtgcagAGCTCCACAAGAAGGAAACCTGCGAGGCTGTTACCATCATCGAGACCCCTCCGCTTGTCATTGTTGGACTCGTGGCCTATGTCAAGACACCTCGTGGACT

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G361049_T01 (Zea mays), 3'ss of exon 9
tgaagctaatagtattgaattctttaactattacatgaaactttctcttacttg-ttatagc-atcatttaattatctaactatatttcttttttatatcagAGCTTCACAAGAA---GGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTC-CACGTGGTCT------
            | |||| ||  |  |    | ||  | |      |||    |  | |  | |||||| |     ||  |  | |   | |   |  |  |   |    |        |   | |  || ||    ||  |   || | ||    |  | |  |      | |  |  |||| |   | ||||    |  |  |       
------------tgttgattttgtgcagagctccacaagaaggaaacttgtgaggctgtgactatcattgagactcctccccttgtcattgtcggacttgtggaatgtgaagACCCCCCGTGGCCTACGAACCCTCAACTCTGTCTGGGCCCAACACCTTAGCGAAGAAGTGCGGAGAAGGTTCTACAAGAACTGGTGCAAGAGCAAGAAGA

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM5G801409_T04 (Zea mays), 3'ss of exon 2
tgaagctaatagtattgaattctttaactattacatgaaactttctcttacttgttatagcatcatttaattatc-taactatatttcttttttatat----cagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCACGTGGTCT
       ||||      | | |||  ||     |||||| ||      || | | ||     ||| |  |||||| |||||    | | |  ||   |    |||| || || |||||||||||||||||| ||||||| || ||||| ||||||||  | || ||||||||  | ||||  |||||||| ||||| ||||| ||
ctgtttgaatatccacaactgcttgcacc----catgaatctcaagtata-tggataccatttcactccattatcgtaactgctctgcctacttgatttctacagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCCTCTTGTCATTGTTGGGCTCGTGGCATATGTGAAGACTCCTCGTGGCCT

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G135727_T03 (Zea mays), 3'ss of exon 3
tgaagctaatagtattgaattctttaactatt---acatgaaactttctcttacttgt-tatagcatcatttaattatc-taactatatttctttttta----tatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCACGTGGTCT
           || |  |  ||   ||||  |   ||     | | ||   ||| ||  ||     ||| |  |||||| |||||    ||| |  ||       ||||| || || |||||||||||||||||| ||||||| || ||||| ||||||||  | || ||||||||  | ||||  |||||||| ||||| ||||| ||
---------ctgtttgaatatccacaactgcttgcacccatgaatctcgagtacatggataccatttcactccattatcgtaactgctcttcctacttgatttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCCTCTTGTCATTGTTGGGCTCGTGGCATATGTGAAGACTCCTCGTGGCCT

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G324314_T05 (Zea mays), 3'ss of exon 3
tgaagctaatagtattgaattctttaactattacatgaaactttctcttacttgttatagcatcatttaattatc-taactatatttcttttttatat----cagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCACGTGGTCT
|      ||||      | | |||  ||     |||||| ||      || | | ||     ||| |  |||||| |||||    | | |  ||   |    |||| || || |||||||||||||||||| ||||||| || ||||| ||||||||  | || ||||||||  | ||||  |||||||| ||||| ||||| ||
tctgttgaatatccacaactgcttgcacc----catgaatctcgagtata-tggataccatttcactccattatcgtaactgctctgcctacttgatttctacagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCCTCTTGTCATTGTTGGGCTCGTGGCATATGTGAAGACTCCTCGTGGCCT

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G132968_T02 (Zea mays), 3'ss of exon 3
tgaagctaatagtattgaattctttaactatt---acatgaaactttctcttacttgt-tatagcatcatttaattatc-taactatatttctttttta----tatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCACGTGGTCT
           || |  |  ||   ||||  |   ||     | | ||   ||| ||  ||     ||| |  |||||  |||||    ||| |  ||       ||||| || || |||||||||||||||||| ||||||| || ||||| ||||||||  | || ||||||||  | ||||  |||||||| ||||| ||||| ||
---------ctgtttgaatatccacaactgcttgcacccatgaatctcaagtacatggataccatttcactccattattgtaactgctcttcctacttgatttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCCTCTTGTCATTGTTGGGCTCGTGGCATATGTGAAGACTCCTCGTGGCCT

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G109677_T03 (Zea mays), 3'ss of exon 5
tgaagctaatagtattgaattctttaactattacatgaaactttctcttacttgttatagcatcatttaattatc-taactatatttcttttttatat----cagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCACGTGGTCT
       ||||      | | |||  ||     |||||| ||      || | | ||     ||| |  |||||| |||||    | | |  ||   |    |||| || || |||||||||||||||||| ||||||| || ||||| ||||||||  | || ||||||||  | ||||  |||||||| ||||| ||||| ||
ctgtttgaatatccacaactgcttgcacc----catgaatctcgagtata-tggataccatttcactccattatcgtaactgctctgcctacttgatttctacagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCCTCTTGTCATTGTTGGGCTCGTGGCATATGTGAAGACTCCTCGTGGCCT

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0072g00340.t01 (Vitis vinifera), 3'ss of exon 3
tgaagctaatagtattgaattctttaactattacatgaaactttctctt--acttgttatagcatcatttaat----tatctaactatatttcttttttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCACGTGGTCT
      |||    ||   | | |   |    | | ||||||||| | |   |||||    |     || || |    |||||||  ||| |  | || ||   ||||||||||||||||||| || |||||  ||||||||||| ||||||| ||||| ||||| || ||||| || |||| |||||| || ||||||||||| ||
---ttttaaatacatcttagtatcacatcggtgcttgaaactttttttccaacttgcacaatttaaatctagtgctgtatctaataatactaatattcta---cagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTCCTATGGTCATAGTTGGAGTGGTGGCTTATGTTAAGACTCCACGTGGCCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13181549|gb|BG352889.1|BG352889
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         A-CTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|209718971|gb|BW674811.1|BW674811
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|14259532|gb|BG882440.1|BG882440
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|209699676|gb|BW655742.1|BW655742
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|7042244|gb|AW472138.1|AW472138
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|209717595|gb|BW671491.1|BW671491
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|6455490|gb|AW186173.1|AW186173
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|120532147|gb|EH260280.1|EH260280
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|9564117|gb|BE473626.1|BE473626
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|16347833|gb|BI973428.1|BI973428
EST:     CTTGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|207691198|gb|GD673206.1|GD673206
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|209729583|gb|BW655159.1|BW655159
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|213595132|gb|DB972066.1|DB972066
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|193715889|gb|FK655940.1|FK655940
EST:     GGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: GGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|8827243|gb|BE210973.1|BE210973
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|209700389|gb|BW660833.1|BW660833
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|209711914|gb|BW678993.1|BW678993
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|213601307|gb|DB956559.1|DB956559
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|213603059|gb|DB960392.1|DB960392
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|24136571|gb|BU927081.1|BU927081
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|209705363|gb|BW668007.1|BW668007
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|7924415|gb|AW830441.1|AW830441
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|209706622|gb|BW676143.1|BW676143
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|213592538|gb|DB961798.1|DB961798
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|213616738|gb|DB971249.1|DB971249
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|209716133|gb|BW668659.1|BW668659
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|7147554|gb|AW509476.1|AW509476
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|7684769|gb|AW755417.1|AW755417
EST:     AAGGCCCGG-ATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: AAGGCC-GGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|17963955|gb|BM270698.1|BM270698
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|209699780|gb|BW655793.1|BW655793
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|209718048|gb|BW671881.1|BW671881
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|213596684|gb|DB956048.1|DB956048
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
EST: gi|209709118|gb|BW658834.1|BW658834
EST:     CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAA                         AGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC
genomic: CAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagttcca ... tttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttacttgttatagcatcatttaattatctaactatatttcttttttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCACGTGGTCT
                           atctaac  putative branch site (score: 2)
                                 ctatatttctttttt  CT-rich tract
                atcatttaattatcta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgaagctaatagtattgaattctttaactattacatgaaactttctcttacttgttatagcatcatttaattatctaactatatttcttttttatatcagAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCACGTGGTCT

- - - - - - - -tgaattc
- - - - - - - - - - - - - - - - -catgaaa