Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggctataagttgcatcttatcacatatgtctattgtcttgtactattaatatattgttgtgggacatacttatgagttatgaatattgatctaattgcagATGGTTGCATTGCTGGAGGTGCTGCTGGTGTTGTTGTAGAAACAGCTTTATACCCCATTGATACCATCAAAACTCGACTACAG

Basic information

species Glycine max
transcript GLYMA10G36580.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36580.3 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os07g19460.1 (Oryza sativa), 3'ss of exon 2
ggctataagttgcatct-tatcacatatgtctattgtcttgtactattaatatattgttgtgggacatactta--tgagttatgaatattgatctaattgcagATGGTTGCATTGCTGGAGGTGCTGCTGGTGTTGTTGTAGAAACAGCTTTATACCCCATTGATACCATCAAAACTCGACTACAG
    |     ||  |    ||   ||   || |||  |  | || |  | | ||| || ||    |    |||    || |   |       |  |||| |||| |||   || |||||||||||||| ||||||||||| || |||||| | || || |||||||| || |||||  | || |||
--tcagggaatgtgtaaacattggatgattcaattagcaggaacgaaaagt-tatagtagtacatctggtttagtcaagcttatatagccttttcaatttcagAGGGTGTAATAGCTGGAGGTGCTGCCGGTGTTGTTGTTGAGACAGCTCTGTATCCTATTGATACAATAAAAACCAGGCTTCAG

upper sequence: GLYMA10G36580.3 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G169914_T01 (Zea mays), 3'ss of exon 2
ggctataagttgcatcttatcacatatgtcta---ttgtcttgtactattaatatattgttgtgggacatacttatgagttatgaatat-tgatctaattgcagATGGTTGCATTGCTGGAGGTGCTGCTGGTGTTGTTGTAGAAACAGCTTTATACCCCATTGATACCATCAAAACTCGACTACAG
    | |  |  |   | | ||  |   | ||   || |  | ||| ||  |    | |||||        || ||  | |     |   |  |  |||| |||| ||   | | |||||||| ||||||||||||||||| |||||||||||||| || |||||||| || || ||  | || |||
----agagttctctattcagcagttggatttagatttatggtatacaatgtaggcttggttgtccttatgcctcatttgcttgacgtgccttttacaattccagAGGGGGCCTTGGCTGGAGGAGCTGCTGGTGTTGTTGTTGAAACAGCTTTATATCCTATTGATACAATAAAGACCAGGCTTCAG

upper sequence: GLYMA10G36580.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0157g00180.t01 (Vitis vinifera), 3'ss of exon 2
ggctataagttgcatcttatcacatatgtctattgtcttgtactattaatatattgttgtgggacatacttatgagttatgaatattgatctaa----ttgcagATGGTTGCATTGCTGGAGGTGCTGCTGGTGTTGTTGTAGAAACAGCTTTATACCCCATTGATACCATCAAAACTCGACTACAG
   | | | ||  || || |     |  | |    |||| |   |  |  |  |  |||    | || ||||||  |      | ||| | |      ||||||| |||    | |||||||||  ||||||||||||||| ||| |||||||||| || |||||||| || |||||| |||| |||
-ttttttatttttattttctttgccaaattt--catcttatgacaaaatcacgtccttgcttaatat-cttatgcttctaatgttttgttatgggtttttgcagAGGGTCTTGTAGCTGGAGGTATTGCTGGTGTTGTTGTTGAAGCAGCTTTATATCCAATTGATACAATAAAAACTAGACTTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192330015|gb|FK020831.1|FK020831
EST:     CATCAGTCAAGGAGAGAAAAAACCATTTGACTTTTTACGTGTTTTATATG                         ATGGTTGCATTGCTGGAGGTGCTGCTGGTGTTGTTGTAGAAACAGCTTTAT
genomic: CATCAGTCAAGGAGAGAAAAAACCATTTGACTTTTTACGTGTTTTATATGgtaagtattg ... ctaattgcagATGGTTGCATTGCTGGAGGTGCTGCTGGTGTTGTTGTAGAAACAGCTTTAT
EST: gi|192328563|gb|FK020781.1|FK020781
EST:     CATCAGTCAAGGAGAGAAAAAACCATTTGACTTTTTACGTGTTTTATATG                         ATGGTTGCATTGCTGGAGGTGCTGCTGGTGTTGTTGTAGAAACAGCTTTAT
genomic: CATCAGTCAAGGAGAGAAAAAACCATTTGACTTTTTACGTGTTTTATATGgtaagtattg ... ctaattgcagATGGTTGCATTGCTGGAGGTGCTGCTGGTGTTGTTGTAGAAACAGCTTTAT
EST: gi|192328905|gb|FK021374.1|FK021374
EST:     CATCAGTCAAGGAGAGAAAAAACCATTTGACTTTTTACGTGTTTTATATT                         ATGGTTGCATTGCTGGAGGTGCTGCTGGTGTTGTTGTAGAAACAGCTTTAT
genomic: CATCAGTCAAGGAGAGAAAAAACCATTTGACTTTTTACGTGTTTTATATGgtaagtattg ... ctaattgcagATGGTTGCATTGCTGGAGGTGCTGCTGGTGTTGTTGTAGAAACAGCTTTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatatattgttgtgggacatacttatgagttatgaatattgatctaattgcagATGGTTGCATTGCTGGAGGTGCTGCTGGTGTTGTTGTAGAAACAGCTTTATACCCCATTGATACCATCAAAACTCGACTACAG
                                    aatattgatctaatt  TA-rich tract