1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttaccaatactctaatttaagcagcttctaatctccccacctcctgcttttctaatataagatggttctttattgtaaaatggtatatttatttgatgtatattgtagATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCAGAGCGAAGCAGCTTCAACCTCATGAATACAACACTG
species | Glycine max |
transcript | GLYMA10G35960.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGCTATAGATGGCGGATTGATTACACCAGTGCTTCAGGGTGCTGATAAG ATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCEST: gi|208195745|gb|GD993508.1|GD993508
genomic: TGGCTATAGATGGCGGATTGATTACACCAGTGCTTCAGGGTGCTGATAAGgtttaccaat ... tatattgtagATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCC
EST: TGGCTATAGATGGCGGATTGATTACACCAGTGCTTCAGGGTGCTGATAAG ATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGEST: gi|208057351|gb|GD850900.1|GD850900
genomic: TGGCTATAGATGGCGGATTGATTACACCAGTGCTTCAGGGTGCTGATAAGgtttaccaat ... tatattgtagATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTG
EST: TGGCTATAGATGGCGGATTGATTACACCAGTGCTTCAGGGTGCTGATAAG ATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCEST: gi|193526533|gb|FK485809.1|FK485809
genomic: TGGCTATAGATGGCGGATTGATTACACCAGTGCTTCAGGGTGCTGATAAGgtttaccaat ... tatattgtagATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCC
EST: TGGCTATAGATGGCGGATTGATTACACCAGTGCTTCAGGGTGCTGATAAG ATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCEST: gi|13790727|gb|BG653318.1|BG653318
genomic: TGGCTATAGATGGCGGATTGATTACACCAGTGCTTCAGGGTGCTGATAAGgtttaccaat ... tatattgtagATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCC
EST: TGGCTATAGATGGCGGATTGATTACACCAGTGCTTCAGGGTGCTGATAAG ATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCEST: gi|208235385|gb|GE029669.1|GE029669
genomic: TGGCTATAGATGGCGGATTGATTACACCAGTGCTTCAGGGTGCTGATAAGgtttaccaat ... tatattgtagATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCC
EST: TGGCTATAGATGGCGGATTGATTACACCAGTGCTTCAGGGTGCTGATAAG ATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCEST: gi|193638704|gb|FK586862.1|FK586862
genomic: TGGCTATAGATGGCGGATTGATTACACCAGTGCTTCAGGGTGCTGATAAGgtttaccaat ... tatattgtagATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCC
EST: TGGCTATAGATGGCGGATTGATTACACCAGTGCTTCAGGGTGCTGATAAG ATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCC
genomic: TGGCTATAGATGGCGGATTGATTACACCAGTGCTTCAGGGTGCTGATAAGgtttaccaat ... tatattgtagATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCC
aatataagatggttctttattgtaaaatggtatatttatttgatgtatattgtagATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCAGAGCGAAGCAGCTTCAACCTCATGAATACAACACTG
tttattgtaaaatggt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttaccaatactctaatttaagcagcttctaatctccccacctcctgcttttctaatataagatggttctttattgtaaaatggtatatttatttgatgtatattgtagATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCAGAGCGAAGCAGCTTCAACCTCATGAATACAACACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT