Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaacttggtcaaatctttagttcatattttgtttaaattctcctaagccataagaaaaatcttttattcaaatacattacatttaattttgctatatatttgtgttgtctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG

Basic information

species Glycine max
transcript GLYMA10G35750.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213590406|gb|DB968040.1|DB968040
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|192302155|gb|FG997263.1|FG997263
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATTTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|214007866|gb|DB986455.1|DB986455
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|192334425|gb|FK024118.1|FK024118
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|192334424|gb|FK024117.1|FK024117
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|23734897|gb|BU765699.1|BU765699
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|298172616|gb|HO019656.1|HO019656
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         CTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|58018430|gb|CX705172.1|CX705172
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|4290733|gb|AI437519.1|AI437519
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|151403195|gb|EV273005.1|EV273005
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|151413076|gb|EV282884.1|EV282884
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|213608151|gb|DB974891.1|DB974891
EST:     AATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAGATCTCTGAAGGAGTCTGAGCGT
genomic: AATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|15286464|gb|BI470355.1|BI470355
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|14990063|gb|BI315736.1|BI315736
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|192320476|gb|FK012334.1|FK012334
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATTTCTGAAGGAGTTTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|192295734|gb|FG990828.1|FG990828
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|213589697|gb|DB973256.1|DB973256
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|151399048|gb|EV268919.1|EV268919
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|18848601|gb|BM567756.1|BM567756
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|9564208|gb|BE473717.1|BE473717
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|213603296|gb|DB981953.1|DB981953
EST:     TGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGTAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: TGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|192329215|gb|FK020134.1|FK020134
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGC
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGC
EST: gi|19938147|gb|BQ081583.1|BQ081583
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|31464426|gb|CD406454.1|CD406454
EST:     AGTTTGTTGACACAGTAACTCCTCTATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|213597321|gb|DB964394.1|DB964394
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|192320477|gb|FK012335.1|FK012335
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTTTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|209699416|gb|BW664135.1|BW664135
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|298163206|gb|HO011939.1|HO011939
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|207678603|gb|GD661141.1|GD661141
EST:     AGTTTGTTGACACAGTAACTCCTCAGTACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAA
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAA
EST: gi|15663571|gb|BI700942.1|BI700942
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|213606671|gb|DB972555.1|DB972555
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGTTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|298172356|gb|HO019396.1|HO019396
EST:     AGTTTGTTGACACAGTAACCCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|19934667|gb|BQ079697.1|BQ079697
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|4405525|gb|AI507674.1|AI507674
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|254345423|gb|GR855866.1|GR855866
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTTTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|192308179|gb|FK001277.1|FK001277
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|15202357|gb|BI425359.1|BI425359
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|192309712|gb|FK001018.1|FK001018
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATACCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|214009364|gb|DB990076.1|DB990076
EST:     AGTTTGTTGACACAGTAACTCTTTAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|193723412|gb|FK657120.1|FK657120
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGGAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|192302154|gb|FG997262.1|FG997262
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|192299291|gb|FG988691.1|FG988691
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|8282974|gb|BE020535.1|BE020535
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|298199220|gb|HO042583.1|HO042583
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|9987567|gb|BE661675.1|BE661675
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCCG
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGC-G
EST: gi|193674424|gb|FK619938.1|FK619938
EST:     CTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: CTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|8401548|gb|BE057112.1|BE057112
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|298170488|gb|HO019112.1|HO019112
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|214010033|gb|DB989405.1|DB989405
EST:     AGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGTTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|58021780|gb|CX708521.1|CX708521
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|298166983|gb|HO010422.1|HO010422
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|209699417|gb|BW664136.1|BW664136
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|12496502|gb|BG047096.1|BG047096
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|19935135|gb|BQ080165.1|BQ080165
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|151404461|gb|EV274275.1|EV274275
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|298163051|gb|HO011784.1|HO011784
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|298184504|gb|HO029717.1|HO029717
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|254345422|gb|GR855865.1|GR855865
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|298172709|gb|HO019749.1|HO019749
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|58014671|gb|CX701413.1|CX701413
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|298179912|gb|HO025127.1|HO025127
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|208106087|gb|GD905084.1|GD905084
EST:     AGTTTGTTGACACAGTAACTCCTCAGTACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAA
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAA
EST: gi|193639952|gb|FK594005.1|FK594005
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|298191701|gb|HO035783.1|HO035783
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|58019285|gb|CX706027.1|CX706027
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|18040249|gb|BM308543.1|BM308543
EST:     AATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|298163644|gb|HO012377.1|HO012377
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|192308180|gb|FK001278.1|FK001278
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|213617607|gb|DB969319.1|DB969319
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|37994969|gb|CF806558.1|CF806558
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|6963937|gb|AW432630.1|AW432630
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|151409411|gb|EV279219.1|EV279219
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGGGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|298189156|gb|HO037559.1|HO037559
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|24135641|gb|BU926151.1|BU926151
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|213601186|gb|DB956494.1|DB956494
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|21678267|gb|BQ630618.1|BQ630618
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|8402877|gb|BE058511.1|BE058511
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
EST: gi|151410606|gb|EV280421.1|EV280421
EST:     AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTA                         TTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT
genomic: AGTTTGTTGACACAGTAACTCCTCAATACAAGACTAAATTTGATGCCCTAgtaagaactt ... ctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattcaaatacattacatttaattttgctatatatttgtgttgtctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG
                                           gtctgac  putative branch site (score: 3)
      aaatacattacattta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagaacttggtcaaatctttagttcatattttgtttaaattctcctaagccataagaaaaatcttttattcaaatacattacatttaattttgctatatatttgtgttgtctgactgcagTTGATTGAGCTTAAAGAAGCAGAGGAGAAATCTCTGAAGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG