1 5' 3' | 2 5' 3' | 3 5' 3' |
...cgagatatttatttctaaatatttaaaaaatagtacacatttgagtcatgatttagattactttatcaatgtccctgatttgcatttaactgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGCCCCATTGCAAAGTCATACCGAGCAGTTAGTAATGTCCTTCCACTTGTTG
species | Glycine max |
transcript | GLYMA10G35680.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAG GATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGCEST: gi|192330388|gb|FK021175.1|FK021175
genomic: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAGgtatacatta ... tgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
EST: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAG GATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGCEST: gi|21678119|gb|BQ630461.1|BQ630461
genomic: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAGgtatacatta ... tgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
EST: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAG GATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTEST: gi|192306573|gb|FG997243.1|FG997243
genomic: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAGgtatacatta ... tgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTT
EST: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAG GATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGCEST: gi|27425537|gb|CA937057.1|CA937057
genomic: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAGgtatacatta ... tgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
EST: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAG GATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGCEST: gi|192326462|gb|FK017719.1|FK017719
genomic: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAGgtatacatta ... tgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
EST: ACAGCCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAG GATGGTTCAAAGCATGAG-CCAACAATGATTGGCTTCAAAATGGTAACTGCEST: gi|192307013|gb|FK002679.1|FK002679
genomic: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAGgtatacatta ... tgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
EST: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAG GATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGCEST: gi|192322721|gb|FK014412.1|FK014412
genomic: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAGgtatacatta ... tgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
EST: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAG GATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGCEST: gi|192324374|gb|FK015725.1|FK015725
genomic: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAGgtatacatta ... tgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
EST: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAG GATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGCEST: gi|151412720|gb|EV282532.1|EV282532
genomic: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAGgtatacatta ... tgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
EST: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAG GATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
genomic: ACAACCAGAAAAGAAAATCCAAATCATCAAAAAATGAACCTTCTTCACAGgtatacatta ... tgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGC
tcatgatttagattactttatcaatgtccctgatttgcatttaactgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGCCCCATTGCAAAGTCATACCGAGCAGTTAGTAATGTCCTTCCACTTGTTG
aactgat putative branch site (score: 3)
atttagattactttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgagatatttatttctaaatatttaaaaaatagtacacatttgagtcatgatttagattactttatcaatgtccctgatttgcatttaactgatgttcagGATGGTTCAAAGCATGAGGCCAACAATGATTGGCTTCAAAATGGTAACTGCCCCATTGCAAAGTCATACCGAGCAGTTAGTAATGTCCTTCCACTTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG