Sequence
atgc intronic sequence ATGC exonic sequence...acattacctaatgggataaggcttttgttgatgatattgatttgaaactatttgaattgctagtgatgctgttcccttattcatattttggattttgtagGCATAAATGTTCTTTGTGGTGTTGGAATCCTTTCTACACCTTATGCTGCCAAAGTAGGTGGATGGCTTGGGCTTTCTATATTGGTCATTTTTGCAATTAT
Basic information
species | Glycine max |
transcript | GLYMA10G35280.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G35280.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G105192_T03 (Zea mays), 3'ss of exon 2
acattacctaatgggataaggcttttgttgatgatattgatttgaaa----ctatttgaattgctagtgatgctgttccctta-ttcatattttggattt-tgtagGCATAAATGTTCTTTGTGGTGTTGGAATCCTTTCTACACCTTATGCTGCCAAAGTAGGTGGATGGCTTGGGCTTTCTATATTGGTCATTTTTGCAATTAT
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----tgaaacatgtaatagattttttgtaccatagataagtcctaaaacttctaatgagaattctcttaat--tgaccattgagcttgtgctatgcttttatgcagGAATAAATGTTCTATGTGGTGTGGGAATCCTATCAACACCTTATGCCATCAAACAAGGCGGGTGGCTTGGACTGGTGATACTCTGTTTATTTGCAATTCT
upper sequence: GLYMA10G35280.2 (Glycine max), 3'ss of exon 3
lower sequence: AT2G39130.1 (Arabidopsis thaliana), 3'ss of exon 4
acattacctaatgggataaggcttttgttgatgatattgatttgaaactatttgaattgctagtgatgctgttcccttattcatattttggattttgt--agGCATAAATGTTCTTTGTGGTGTTGGAATCCTTTCTACACCTTATGCTGCCAAAGTAGGTGGATGGCTTGGGCTTTCTATATTGGTCATTTTTGCAATTAT
||| | | | | || | | || ||||| | || || || || | | ||| | | | ||| | ||| ||| | || ||||||||||| |||||||| ||||| || |||||||||||||||| ||| |||||| | || ||| ||| | | | | || || |
-cat-gttggaccaaacacgtctaggttcaaagaacatgattgagatcttttgctcttagtaaatttatgatcatcttgtataacatgtgggtcatgtgcagGATTGAACGTTCTTTGTGGGGTTGGAATACTTTCAACGCCTTATGCTGCCAAAGAAGGAGGATGGTTAGGACTTATGATACTATTTGTATATGGTCTTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aactatttgaattgctagtgatgctgttcccttattcatattttggattttgtagGCATAAATGTTCTTTGTGGTGTTGGAATCCTTTCTACACCTTATGCTGCCAAAGTAGGTGGATGGCTTGGGCTTTCTATATTGGTCATTTTTGCAATTAT
ttattcatatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acattacctaatgggataaggcttttgttgatgatattgatttgaaactatttgaattgctagtgatgctgttcccttattcatattttggattttgtagGCATAAATGTTCTTTGTGGTGTTGGAATCCTTTCTACACCTTATGCTGCCAAAGTAGGTGGATGGCTTGGGCTTTCTATATTGGTCATTTTTGCAATTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA