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gtaaatatatgttatttagtacttttatttttattttttaatgtaattttttttaatatagtttatgacaaaaaaatattgtcgtcttgatatgttaattattccatggaattgttcttatatgttttagactttgtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCTACAACAGTCAAGTTTGAAATATGGGATACTGCTGGTCAAGAGAG
species | Glycine max |
transcript | GLYMA10G35230.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG GTAACTGTTGGAGCTTCTTTTTTGTCGCANACAATAGCTCTGCAAGACTCTEST: gi|193543327|gb|FK502506.1|FK502506
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCTEST: gi|193724791|gb|FK658075.1|FK658075
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCTEST: gi|15813084|gb|BI785359.1|BI785359
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCTEST: gi|308098577|gb|HO760318.1|HO760318
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCTEST: gi|298165609|gb|HO011658.1|HO011658
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: GCTGTATTGTTCTGCGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCTEST: gi|298183380|gb|HO028593.1|HO028593
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCTEST: gi|7286166|gb|AW598653.1|AW598653
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCTEST: gi|298177777|gb|HO027330.1|HO027330
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCTEST: gi|298182667|gb|HO031402.1|HO031402
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCTEST: gi|298185154|gb|HO030367.1|HO030367
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCTEST: gi|15201204|gb|BI424748.1|BI424748
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCTEST: gi|298174351|gb|HO017687.1|HO017687
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
EST: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCT
tatgttaattattccatggaattgttcttatatgttttagactttgtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCTACAACAGTCAAGTTTGAAATATGGGATACTGCTGGTCAAGAGAG
tgttaat putative branch site (score: 3)
ttcttatatgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatatatgttatttagtacttttatttttattttttaatgtaattttttttaatatagtttatgacaaaaaaatattgtcgtcttgatatgttaattattccatggaattgttcttatatgttttagactttgtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCTACAACAGTCAAGTTTGAAATATGGGATACTGCTGGTCAAGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA