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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatataaaatacccaacacatgaagttattagtgtaaagaaaagcataaagtggggaacctccttttgtgtgcactgttaagaaacttctattcattgtttaaaagGTGCAGGCACCCAAAGTCAAGCTAGGGGACAAAATCACAGCCCTTCAGCAAATTGTGTCTCCATTTGGAAAG

Basic information

species Glycine max
transcript GLYMA10G35040.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35040.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0010g02070.t01 (Vitis vinifera), 3'ss of exon 3
gtatatatataaaatacccaacacatgaagttattagtgtaaagaaaagcataaagtggggaacctccttttgtgtgcactgttaagaaacttctattcattgtttaaaagGTGCAGGCACCCAAAGTCAAGCTAGGGGACAAAATCACAGCCCTTCAGCAAATTGTGTCTCCATTTGGAAAG
     |||||  |  ||  ||  ||| |  || |   |  |||   ||             ||  | || |   |     |  | | ||     |||  ||   || | || ||||||| || ||||||||| | || || |  |||||||| ||||||||||||||||| || |||||||||
----gtatatggataacaaaaaccataattttgt--attcaaaatgaa-------------aatttgctgtcacgcttggtcctgaaaa-----tatgtat-actttacagATGCAGGCCCCGAAAGTCAAGATTGGAGATAGGATCACAGCTCTTCAGCAAATTGTGTCGCCTTTTGGAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggggaacctccttttgtgtgcactgttaagaaacttctattcattgtttaaaagGTGCAGGCACCCAAAGTCAAGCTAGGGGACAAAATCACAGCCCTTCAGCAAATTGTGTCTCCATTTGGAAAG
                                      tattcattgtttaaaa  TA-rich tract