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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagattttttcttaactaattgaaaataaacataagatggtaaagaattttatacacaccttttatatttcctctgtcagGCAGATGTTGTCAATGAAAGCAAAAGGGCAGCAGTATTTGGTTGGATTACTGGTCTCCTTTCTGCTTCACATGTTCTGGGGGATGTACTGGCTTGGTCTC

Basic information

species Glycine max
transcript GLYMA10G34820.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33389241|gb|CA852448.1|CA852448
EST:     CAAATATAATCAGTCAAGGGAGTATTTTCTGCATTTCTGTTGCATATGCA                         GCAGATGTTGTCAATGAAAGCAAAAGGGCAGCAGTATTTGGTTGGATTACT
genomic: CAAATATAATCAGTCAAGGGAGTATTTTCTGCATTTCTGTTGCATATGCAgtgagatttt ... cctctgtcagGCAGATGTTGTCAATGAAAGCAAAAGGGCAGCAGTATTTGGTTGGATTACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaacataagatggtaaagaattttatacacaccttttatatttcctctgtcagGCAGATGTTGTCAATGAAAGCAAAAGGGCAGCAGTATTTGGTTGGATTACTGGTCTCCTTTCTGCTTCACATGTTCTGGGGGATGTACTGGCTTGGTCTC
                                 ccttttatatttcctc  CT-rich tract
               taaagaattttataca  TA-rich tract