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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatctctatatagtatgttctgattgttatgtgtttgagatgttactataattgcttattgattattttggtggtttctgcagCTGCCACACCAAAGCAAATTAGAGAGATAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTGCAG

Basic information

species Glycine max
transcript GLYMA10G34780.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34780.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0011g03110.t01 (Vitis vinifera), 3'ss of exon 3
------------------------------gtgagtatctctatatagtatg-ttctgattgttatgtgtttgagatgttactataattgcttattgattattttggtggtttctgcagCTGCCACACCAAAGCAAATTAGAGAGATAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTGCAG
                               |   ||  | | | ||  ||  ||    |    ||| | ||||  ||  | || | ||| ||  |  || |     |  || |||||| ||| || |||||||| || || ||  | ||||| |||||||| || || ||||||||||||||||||||||| |||
gtgtgtatatacttggagacaattgtgattctagttaaatttttttaacataatttccctcaaaatgggattgaattga-attaaatttgattgatttttttccctttttttcctgcagTTGCTACCCCAAAGCAGATCAGGGAACTGATGAAGGTTGATGGGCTTACTAATGATGAAGTCAAAAGCCATTTACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204658|gb|BI427426.1|BI427426
EST:     CTTGCACAAGCGCTTCTTGCATGCCCTTCAGCAGCTTGGGGGTGCAGATA                         CTGCCACACCAAAGCAAATTAGAGAGATAATGAATGTTGATGGCCTCACAA
genomic: CTTGCACAAGCGCTTCTTGCATGCCCTTCAGCAGCTTGGGGGTGCAGATAgtgagtatct ... gtttctgcagCTGCCACACCAAAGCAAATTAGAGAGATAATGAATGTTGATGGCCTCACAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtgtttgagatgttactataattgcttattgattattttggtggtttctgcagCTGCCACACCAAAGCAAATTAGAGAGATAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTGCAG
                            tattgat  putative branch site (score: 3)
                                              tttctgc  putative PPT
              ttactataattgctta  TA-rich tract