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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattactattactatagagttatcccattcaataaaagtcttttctttatctataaaggaaaactgttatgacatggattgttttcttgaattttttattttttttttactgaagtgaaagtttttgagagtactgtttcattggttgcagGTGTATCAATTATCAATTGGAGCTGCATGTGGGCTATCATGGCCATCTGATAGGATTATTATTCAAGTTCTTGATGATTCCACTGACCCAATCATTAAG

Basic information

species Glycine max
transcript GLYMA10G34550.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34550.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0074g00500.t01 (Vitis vinifera), 3'ss of exon 1
gtattactattactatagagttatcccattcaataaaagtcttttctttatctataaaggaaaactgttatgacatggattgttttcttgaattttttattttttttttactgaagtgaaagtttttgagagtactgtttcattggttgcagGTGTATCAATTATCAATTGGAGCTGCATGTGGGCTATCATGGCCATCTGATAGGATTATTATTCAAGTTCTTGATGATTCCACTGACCCAATCATTAAG
                                                    ||  ||  || |   | ||||     ||    | ||  |||||||| |  | |      |     | |  | |       | ||| ||   |   ||||||| || ||  | || ||||||||||||||||| || |||||||| ||||| || || || ||||||||||| || |||||||| ||||||| |||||||
---------------------------------------------------gtaccaaataatatcatcatgat---catcaggtcctgaaattttttgtcatatcac-gttctctcgcacatct---gattttctgcttttgtttctgcagGTTTACCAGCTCTCCATTGGAGCTGCATGTGGCCTTTCATGGCCTTCTGAAAGAATCATAATTCAAGTTCTGGACGATTCCACCGACCCAACCATTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttttttttactgaagtgaaagtttttgagagtactgtttcattggttgcagGTGTATCAATTATCAATTGGAGCTGCATGTGGGCTATCATGGCCATCTGATAGGATTATTATTCAAGTTCTTGATGATTCCACTGACCCAATCATTAAG
                                        tttcatt  CT-rich tract
     tttttttact  TA-rich tract