1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttattttcattgcaggatcctttctctatgctttaatgttattcataatcatagatggagataaaaagcttagcttatacatttttttgccattgaacagGTCATTCATTGAAGACTCTCAGGCTGGCATAAAGATATCTCCTCAAGATAATAATTACTATGGACAGAATGATAGGCTAGTGACGCTGACAGGATCTTTT
species | Glycine max |
transcript | GLYMA10G34220.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCTAATGGTTCATGTGGTGGAATAATTGGCAAGGGAGGTGCTACCATTAG GTCATTCATTGAAGACTCTCAGGCTGGCATAAAGATATCTCCTCAAGATAAEST: gi|33389766|gb|CA852973.1|CA852973
genomic: CCTAATGGTTCATGTGGTGGAATAATTGGCAAGGGAGGTGCTACCATTAGgtaccattac ... cattgaacagGTCATTCATTGAAGACTCTCAGGCTGGCATAAAGATATCTCCTCAAGATAA
EST: CCTAATGGTTCATGTGGTGGAATAATTGGCAAGGGAGGTGCTACCATTAG GTCATTCATTGAAGACTCTCAGGCTGGCATAAAGATATCTCCTCAAGATAA
genomic: CCTAATGGTTCATGTGGTGGAATAATTGGCAAGGGAGGTGCTACCATTAGgtaccattac ... cattgaacagGTCATTCATTGAAGACTCTCAGGCTGGCATAAAGATATCTCCTCAAGATAA
taatcatagatggagataaaaagcttagcttatacatttttttgccattgaacagGTCATTCATTGAAGACTCTCAGGCTGGCATAAAGATATCTCCTCAAGATAATAATTACTATGGACAGAATGATAGGCTAGTGACGCTGACAGGATCTTTT
tttttttgcc CT-rich tract
ttatacattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattttcattgcaggatcctttctctatgctttaatgttattcataatcatagatggagataaaaagcttagcttatacatttttttgccattgaacagGTCATTCATTGAAGACTCTCAGGCTGGCATAAAGATATCTCCTCAAGATAATAATTACTATGGACAGAATGATAGGCTAGTGACGCTGACAGGATCTTTT
- - - -cattgca
- - - - - - - - - - - - -ctatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - -gatggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaa