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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttattttcattgcaggatcctttctctatgctttaatgttattcataatcatagatggagataaaaagcttagcttatacatttttttgccattgaacagGTCATTCATTGAAGACTCTCAGGCTGGCATAAAGATATCTCCTCAAGATAATAATTACTATGGACAGAATGATAGGCTAGTGACGCTGACAGGATCTTTT

Basic information

species Glycine max
transcript GLYMA10G34220.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34220.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0019g05360.t01 (Vitis vinifera), 3'ss of exon 5
-ttattttcattgcaggatcctttctctatgctttaatgttattcataatcatagatggagataaaaagcttagcttatacatttttttgccatt-gaacagGTCATTCATTGAAGACTCTCAGGCTGGCATAAAGATATCTCCTCAAGATAATAATTACTATGGACAGAATGATAGGCTAGTGACGCTGACAGGATCTTTT
 ||  |    ||     ||    |  | ||   || || || || |||   ||  |   | |  |  |   | ||| |||  |     |||| || ||  |||||||| || |||||||| || ||  |||| ||||||||||||||||||||||||||   ||||  || |||||||||||||||  |||  || ||| | 
tttgctgatgtt-tgctatttactgacaattgcttcatttt-ttaatatatatttacccacaatatgactgtcgctgatatctgggcatgccttttgagtagGTCATTTATCGAAGACTCCCAAGCCAGCATTAAGATATCTCCTCAAGATAATAATTATCTTGGATTGACTGATAGGCTAGTGACATTGATGGGCTCTCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208230613|gb|GE029834.1|GE029834
EST:     CCTAATGGTTCATGTGGTGGAATAATTGGCAAGGGAGGTGCTACCATTAG                         GTCATTCATTGAAGACTCTCAGGCTGGCATAAAGATATCTCCTCAAGATAA
genomic: CCTAATGGTTCATGTGGTGGAATAATTGGCAAGGGAGGTGCTACCATTAGgtaccattac ... cattgaacagGTCATTCATTGAAGACTCTCAGGCTGGCATAAAGATATCTCCTCAAGATAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatcatagatggagataaaaagcttagcttatacatttttttgccattgaacagGTCATTCATTGAAGACTCTCAGGCTGGCATAAAGATATCTCCTCAAGATAATAATTACTATGGACAGAATGATAGGCTAGTGACGCTGACAGGATCTTTT
                                    tttttttgcc  CT-rich tract
                             ttatacattttttt  TA-rich tract