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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttatcctctcacattttcactctcatttttcattatctgtgtgaatttcccatgtgaaaacaatatgttgcagGGTTGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGATAGCAGCAGGTTCTGAACTCTCAGAAGACCAAGTCATTCAATTTGTTGCAGGC

Basic information

species Glycine max
transcript GLYMA10G34170.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34170.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0019g05260.t01 (Vitis vinifera), 3'ss of exon 4
gtgtgttatc-ctctcacattttcactctcatttttcattatctgtgtgaatttcccatgtga--aaacaatatgttgc-agGGTTGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGATAGCAGCAGGTTCTGAACTCTCAGAAGACCAAGTCATTCAATTTGTTGCAGGC
||| | |||| |||||  |    ||   |    ||   | || ||  |   |||  | | | |   |  |  | ||| | |||||||||||||||| | | || |||||||||||||||||||| |||| |||||  || ||||||||| |  || |  |||||||||||||||| || |||
gtgcgctatctctctctgaaccccatgttttgattcactcatttgattatctttatcttctaacagagtagaacgtttccagGGTTGAAGATGAAGCAGCAGGGCAGATACCAATGGCATATGTAGTGAGAGCAGGTGGATCTGAACTCACCCAACAAGAAGTCATTCAATTTGTAGCTGGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actctcatttttcattatctgtgtgaatttcccatgtgaaaacaatatgttgcagGGTTGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGATAGCAGCAGGTTCTGAACTCTCAGAAGACCAAGTCATTCAATTTGTTGCAGGC
      atttttcattatct  TA-rich tract