1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcagaaatcggatgacctcaaaaaatattttttcatgctgatataaaatttaaattcgattgtttacaacttgttccttttttcccctttcctttttcagATGACAGCTTTGAAGTCTGCCAACAAGGAGTTGAAGGGAATGATGAAAACTGTGAAGATCCAAGACATTGAT
species | Glycine max |
transcript | GLYMA10G33960.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGATCAAGTTCAATTTGCAGCTGAAGGCATTAAAGATGCTCAACAAACT ATGACAGCTTTGAAGTCTGCCAACAAGGAGTTGAAGGGAATGATGAAAACTEST: gi|192308429|gb|FK000925.1|FK000925
genomic: TCGATCAAGTTCAATTTGCAGCTGAAGGCATTAAAGATGCTCAACAAACTgtatgtatca ... cctttttcagATGACAGCTTTGAAGTCTGCCAACAAGGAGTTGAAGGGAATGATGAAAACT
EST: TCGATCAAGTTCAATTTGCAGCTGAAGGCATTAAAGATGCTCAACAAACT ATGACAGCTTTGAAGTCTGCCAACAAGGAGTTGAAGGGAATGATGAAAACTEST: gi|208136464|gb|GD940180.1|GD940180
genomic: TCGATCAAGTTCAATTTGCAGCTGAAGGCATTAAAGATGCTCAACAAACTgtatgtatca ... cctttttcagATGACAGCTTTGAAGTCTGCCAACAAGGAGTTGAAGGGAATGATGAAAACT
EST: TCGATCAAGTTCAATTTGCAGCTGAAGGCATTAAAGATGCTCAACAAACT ATGACAGCTTTGAAGTCTGCCAACAAGGAGTTGAAGGGAATGATGAAAAEST: gi|151406062|gb|EV275877.1|EV275877
genomic: TCGATCAAGTTCAATTTGCAGCTGAAGGCATTAAAGATGCTCAACAAACTgtatgtatca ... cctttttcagATGACAGCTTTGAAGTCTGCCAACAAGGAGTTGAAGGGAATGATGAAAA
EST: TCGATCAAGTTCAATTTGCAGCTGAAGGCATTAAAGATGCTCAACAAACT ATGACAGCTTTGAAGTCTGCCAACAAGGAGTTGAAGGGAATGATGAAAACT
genomic: TCGATCAAGTTCAATTTGCAGCTGAAGGCATTAAAGATGCTCAACAAACTgtatgtatca ... cctttttcagATGACAGCTTTGAAGTCTGCCAACAAGGAGTTGAAGGGAATGATGAAAACT
aaatttaaattcgattgtttacaacttgttccttttttcccctttcctttttcagATGACAGCTTTGAAGTCTGCCAACAAGGAGTTGAAGGGAATGATGAAAACTGTGAAGATCCAAGACATTGAT
ttgtttacaacttgtt CT-rich tract
attgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagaaatcggatgacctcaaaaaatattttttcatgctgatataaaatttaaattcgattgtttacaacttgttccttttttcccctttcctttttcagATGACAGCTTTGAAGTCTGCCAACAAGGAGTTGAAGGGAATGATGAAAACTGTGAAGATCCAAGACATTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - -cctcaaa
- - - - - - - - - - - - - - - - tcatgct