Sequence
atgc intronic sequence ATGC exonic sequencegtactccttttagacacttcccctgttgatggtatcacagagattgagaaatttatttaccttgtccctgaaattgcagGAAGTAGATGAGCCACTACAACTTGATATGTCTGAACTATGTTTGAGTGATGATTTTTCCCAAGGGCATGATG
Basic information
species | Glycine max |
transcript | GLYMA10G33830.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G33830.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv16s0013g01510.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------------------------------------------gtactccttttagacacttcccctgttgatggtatcacagagattg---agaaattta----tttacc--ttgtccctgaaattgcagGAAGTAGATGAGCCACTACAACTTGATATGTCTGAACTATGTTTGAGTGATGATTTTTCCCAAGGGCATGATG
|| || || || ||| | | | | | | ||| | |||| |||||| |||| | || |||| ||||||||||| || |||||||||||||| ||||||||||| |||||||||||| ||||| || ||
gtaattcttttttttttttaaattttttgtttttatgtcaattgtcactatacttgatgatatttattcattgaagtcacctatcaaaaaaaaataaaaaataaaattattcattgatttcagtttttaccctttgtttttattatgctagGAGGTAGATGAGCCTCTGCAACTTGATATGTCAGAACTATGTTTAAGTGATGATTTTATACAAGGCAATTCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193344886|gb|FK310434.1|FK310434EST: TAATGCACCCATCTACAGTCCGTGGTCCTTGTTATGCTGCTGTTT-CAAA GAAGTAGATGAGCCACTACAACTTGATATGTCTGAACTATGTTTGAGTGAT
genomic: TAATGCACCCATCTACAGTCCGTGGTCCTTGTTATGCTGCTGTTTTCAAAgtactccttt ... gaaattgcagGAAGTAGATGAGCCACTACAACTTGATATGTCTGAACTATGTTTGAGTGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttgatggtatcacagagattgagaaatttatttaccttgtccctgaaattgcagGAAGTAGATGAGCCACTACAACTTGATATGTCTGAACTATGTTTGAGTGATGATTTTTCCCAAGGGCATGATG
tgttgat putative branch site (score: 4)
attgagaaatttattt TA-rich tract