1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagtgatacaatcctctctgcgattttttgtggaattattttctttatgaatgattgatgtccctcctttagcatttctctacatttcttataacttttcatgtccagGTTGTTATTCAAAAGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGACCTCGAGAAAAG
species | Glycine max |
transcript | GLYMA10G33820.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAAACTTTTGTGAGCCCCGAAGATGTGGTTGCTGAAAAT GTTGTTATTCAAAAGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGAEST: gi|16348385|gb|BI973980.1|BI973980
genomic: GAAAACTTTTGTGAGCCCCGAAGATGTGGTTGCTGAAAATgtaagtgata ... tcatgtccagGTTGTTATTCAAAAGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGA
EST: GAAAACTTTTGTGAGCCCCGAAGATGTGGTTGCTGAAAAT GTTGTTATTCAAAAGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGAEST: gi|26047270|gb|CA784115.1|CA784115
genomic: GAAAACTTTTGTGAGCCCCGAAGATGTGGTTGCTGAAAATgtaagtgata ... tcatgtccagGTTGTTATTCAAAAGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGA
EST: GAAAACTTTTGTGAGCCCCGAAGATGTGGTTGCTGAAAAT GTTGTTATTCAAAAGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGAEST: gi|213614179|gb|DB956791.1|DB956791
genomic: GAAAACTTTTGTGAGCCCCGAAGATGTGGTTGCTGAAAATgtaagtgata ... tcatgtccagGTTGTTATTCAAAAGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGA
EST: GAAAACTTTTGTGAGCCCCGAAGATGTGGTTGCTGAAAAT GTTGTTATTCAAAAGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGAEST: gi|209713393|gb|BW681461.1|BW681461
genomic: GAAAACTTTTGTGAGCCCCGAAGATGTGGTTGCTGAAAATgtaagtgata ... tcatgtccagGTTGTTATTCAAAAGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGA
EST: GAAAACTTTTGTGAGCCCCGAAGATGTGGTTGCTGAAAAT GTTGTTATTCAAAAGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGAEST: gi|213587009|gb|DB961746.1|DB961746
genomic: GAAAACTTTTGTGAGCCCCGAAGATGTGGTTGCTGAAAATgtaagtgata ... tcatgtccagGTTGTTATTCAAAAGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGA
EST: GAAAACTTTTGTGAGCCCCGAAGATGTGGTTGCTGAAAAT GTTGTTATTCAAAAGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGAEST: gi|209707553|gb|BW680923.1|BW680923
genomic: GAAAACTTTTGTGAGCCCCGAAGATGTGGTTGCTGAAAATgtaagtgata ... tcatgtccagGTTGTTATTCAAAAGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGA
EST: GAAAACTTTTGTGAGCCCCGAAGATGTGGTTGCTGAAAAT GTTGTTATTCAAAAGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGA
genomic: GAAAACTTTTGTGAGCCCCGAAGATGTGGTTGCTGAAAATgtaagtgata ... tcatgtccagGTTGTTATTCAAAAGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGA
attgatgtccctcctttagcatttctctacatttcttataacttttcatgtccagGTTGTTATTCAAAAGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGACCTCGAGAAAAG
ttataac putative branch site (score: 2)
cttttcat CT-rich tract
atttcttataactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgatacaatcctctctgcgattttttgtggaattattttctttatgaatgattgatgtccctcctttagcatttctctacatttcttataacttttcatgtccagGTTGTTATTCAAAAGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGACCTCGAGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG