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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatttccagggctcattcatttattaaacacttaacaggacattttttattcaacttgcccaagttaaaaaaaaaaatccctatcacttgtaccttgtcaattatttgctgatatagttttttaatcctgcagGTAGTTGTGAAAGATGAAGATGATATGGTTGATTCCTCAGATATCTTTGCTCATATCAGTGGGGTGAACTCCTTCAAATGCAACTATTCCTTCCAGTCCT

Basic information

species Glycine max
transcript GLYMA10G33390.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G33390.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0049g01830.t01 (Vitis vinifera), 3'ss of exon 4
gtaagatttccagggctcattcatttattaaacacttaacaggacattttttattcaacttgcccaagttaaaaaaaaaaatccctatcacttgtaccttgtcaattatttgctgatatagttttttaatcctgcagGTAGTTGTGAAAGATGAAGATGATATGGTTGATTCCTCAGATATCTTTGCTCATATCAGTGGGGTGAACTCCTTCAAATGCAACTATTCCTTCCAGTCCT
                                        | ||  |  | ||||  || ||    || ||  |||         | |  | || | |   | ||||  ||     | | || ||||   |   ||| | | | ||||||| ||||||||  |||||||||||||||||||| | || ||||||||||| |||||||||||||||||||  | | || |||| ||||
--------------------------------------gtaagatctgatctatt--acctgtatgagatactaaa---------tgtggcatgcagcccattaatttcttttcccttttgtattttc-ccaaacagATGGGTATGAAAGAAGAAGATGAACTGGTTGATTCCTCAGATATCCTGGCACATATCAGTGGTGTGAACTCCTTCAAATGCACTTTTCCCATCCAATCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctatcacttgtaccttgtcaattatttgctgatatagttttttaatcctgcagGTAGTTGTGAAAGATGAAGATGATATGGTTGATTCCTCAGATATCTTTGCTCATATCAGTGGGGTGAACTCCTTCAAATGCAACTATTCCTTCCAGTCCT
                                         ttttaat  putative branch site (score: 3)
                                       tttttta  CT-rich tract
                     aattatttgctgatat  TA-rich tract