1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tatatacaaaagatccaaatttcccacttacaatattcaaccactatccacttctgtaaggagtagtgatgtttgtgatttcgattgaaaaccttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGAAGAACCAACACGCTTTGGAATAGGTTGCTTGGGAAG
species | Glycine max |
transcript | GLYMA10G32850.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAG GTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGAEST: gi|14990231|gb|BI315904.1|BI315904
genomic: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAGgtttttgatt ... accttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGA
EST: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAG GTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGAEST: gi|192306703|gb|FG998857.1|FG998857
genomic: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAGgtttttgatt ... accttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGA
EST: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAG GTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGA
genomic: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAGgtttttgatt ... accttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGA
atccacttctgtaaggagtagtgatgtttgtgatttcgattgaaaaccttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGAAGAACCAACACGCTTTGGAATAGGTTGCTTGGGAAG
ccttcac CT-rich tract
attgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatacaaaagatccaaatttcccacttacaatattcaaccactatccacttctgtaaggagtagtgatgtttgtgatttcgattgaaaaccttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGAAGAACCAACACGCTTTGGAATAGGTTGCTTGGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - atccaaa
- - - - - - - - - - ttcccac
- - - - - - - - - - - - - - - - - - -caaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt