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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctacataattcattactcacgcagctgtacaataattcttttcatgattaactaatggccagaacctttttttaaaaaaaaaataaataaatttagtaacttgtcattgacatatatcatttcagGCATTTTTTCTTCACTGCAATGTTATTTGTTTATGGACGAATTCTGAGTCAATGCCTGGTTAACACAGTAACTTCAGACATGGTTTTATATTGGCTAGTG

Basic information

species Glycine max
transcript GLYMA10G32660.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32660.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv00s0598g00010.t01 (Vitis vinifera), 3'ss of exon 3
--------------------------------------gtatctacataattcattactcacgcagctgtac----aataattcttt-----tcatgattaactaatggccagaacc---tttttttaaaaaaaaaataaataaatttagtaacttgtcattgacatatatcatt--tcagGCATTTTTTCTTCACTGCAATGTTATTTGTTTATGGACGAATTCTGAGTCAATGCCTGGTTAACACAGTAACTTCAGACATGGTTTTATATTGGCTAGTG
                                      ||   |   | ||  |   ||| |     ||| |    | | ||| |||     | ||| |||  |  |       |||   ||  |||  |      |||  || ||||  ||  |  | |||  || || |  ||  ||||||| ||||||||||| |||||| ||||||| ||||| || ||||| |||||| | ||||| || ||||||||| | ||||   | ||||||  ||| |||
gtaagtgtaccagtttactatccatagattgatggaatgttgttgtttcatggaaagctctcctgagtgttctgctactgattatttgaagctaatgtttattttgtaatattgaccaagttactttggatgctttatat-tacatttgatatttacttattctcagatttttttactcagGCACTTTTTCTTCACAGCAATGCTATTTGTATATGGCCGCATTCTCAGTCAACGGCTGGTCAATACAGTAACTCCTGACAAATTCTTATATAAGCTTGTG

upper sequence: GLYMA10G32660.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv00s0187g00380.t01 (Vitis vinifera), 3'ss of exon 3
--------------------------------------gtatctacataattcattactcacgcagctgtac----aataattcttt-----tcatgattaactaatggccagaacc---tttttttaaaaaaaaaataaataaatttagtaacttgtcattgacatatatcatt--tcagGCATTTTTTCTTCACTGCAATGTTATTTGTTTATGGACGAATTCTGAGTCAATGCCTGGTTAACACAGTAACTTCAGACATGGTTTTATATTGGCTAGTG
                                      ||   |   | ||  |   ||| |     ||| |    | | ||| |||     | ||| |||  |  |       |||   ||  |||  |      |||  || ||||  ||  |  | |||  || || |  ||  ||||||| ||||||||||| |||||| ||||||| ||||| || ||||| |||||| | ||||| || ||||||||| | ||||   | ||||||  ||| |||
gtaagtgtaccagtttactatccatagattgatggaatgttgttgtttcatggaaagctctcctgagtgttctgctactgattatttgaagctaatgtttattttgtaaaattgaccaagttactttggatgctttatat-tacatttgatatttacttattctcagatttttttactcagGCACTTTTTCTTCACAGCAATGCTATTTGTATATGGCCGCATTCTCAGTCAACGGCTGGTCAATACAGTAACTCCTGACAAATTCTTATATAAGCTTGTG

upper sequence: GLYMA10G32660.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S106_169V6.1 (Physcomitrella patens), 3'ss of exon 1
gtatctacataattcattactcacgcagctgtacaataattcttttcatgattaactaatggccagaacctttttttaaaaaaaaaataaataaatttagtaacttgtcattgacatatatcatttcagGCATTTTTTCTTCACTGCAATGTTATTTGTTTATGGACGAATTCTGAGTCAATGCCTGGTTAACACAGTAACTTCAGAC---ATGGTTTTATATTGGCTAGTG
             |||  | ||   |  |   | |||  ||    |     |||  | |    || |     ||| |||||   |  | | |||    ||| |||||  || |          |||||||||||||||| | || || ||||||| ||||||||||||  || |||   |    ||||| || ||  |   |   |||   ||| |   | |     |    
-------------tcaccattcgttc--ccacaaaatgcttgcaatttc--ttacttgaacatcaaatatgatttataaaacgcatttgactaa---cagttacttgg-atcggt--------tttcagGCATTTTTTCCTTACGGCGATGTTATATGTTTATGGACGCTTTTTGAACAAGCATCTGGTGAAGACTATTTATAGTGACCACATGATCCCACACCTTTTC---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209724720|gb|BW677775.1|BW677775
EST:     AGGAGAGCTCATGAAGATAGGCAGCTGCCAGGATTTAGGCTATTAAATTG                         GCATTTTTTCTTCACTGCAATGTTATTTGTTTATGGACGAATTCTGAGTCA
genomic: AGGAGAGCTCATGAAGATAGGCAGCTGCCAGGATTTAGGCTATTAAATTGgtatctacat ... atcatttcagGCATTTTTTCTTCACTGCAATGTTATTTGTTTATGGACGAATTCTGAGTCA
EST: gi|17153399|gb|BM143332.1|BM143332
EST:     AGGAGAGCTCATGAAGATAGGCAGCTGCCAGGATTTAGGCTATTAAATTG                         GCATTTTTTCTTCACTGCAATGTTATTTGTTTATGGACGAATTCTGAGTCA
genomic: AGGAGAGCTCATGAAGATAGGCAGCTGCCAGGATTTAGGCTATTAAATTGgtatctacat ... atcatttcagGCATTTTTTCTTCACTGCAATGTTATTTGTTTATGGACGAATTCTGAGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaaaaaaaaaataaataaatttagtaacttgtcattgacatatatcatttcagGCATTTTTTCTTCACTGCAATGTTATTTGTTTATGGACGAATTCTGAGTCAATGCCTGGTTAACACAGTAACTTCAGACATGGTTTTATATTGGCTAGTG
                                              tcatttc  CT-rich tract
     aaaaaaaataaataaa  TA-rich tract