Sequence
atgc intronic sequence ATGC exonic sequencegtatgtggtagctttggaggatggttctgattaaatctataaagttcccttgattggtaactgattacatgtattctattctgatcagGTAATCCTTGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATGGCAGGATCAGAAAATATTGAACAAGCTGGTCAAACTGGATTTGAGGCCA
Basic information
species | Glycine max |
transcript | GLYMA10G32610.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G32610.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G062084_T02 (Zea mays), 3'ss of exon 2
----------------------------------------------gtatgtggtagctttggaggatggttctgattaaatctataaagttccc----ttgattggtaactgattacatgtattc------tattctg-atc---agGTAATCCTTGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATGGCAGGATCAGAAAATATTGAACAAGCTGGTCAAACTGGATTTGAGGCCA
|| || | ||| | | | ||| | | | | | || ||| ||| || | | ||| | | || ||| || | ||||| ||||||||| |||||||||| || | ||||||||||||||||| ||||| ||||| || ||| ||| |||||||| |||||||| ||||
gttgaaaagcgaagaactgtgaagagcacactttgtaatgagagaagttcacggagccattgcgtggtttgttgcattcagccaccagcactgtcagcattcatttttaaaaaatcaagctttttcacactatgctttgcatctatagATTATCCTGGATGTCCCAGCTGTGGGAGGAAGGTTGATGCTTGTGGACATGGCTGGATCTGAAAACATAGAAGCAGCAGGTCAAACGGGATTTGAAGCCA
upper sequence: GLYMA10G32610.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G062084_T01 (Zea mays), 3'ss of exon 2
gtatgtggtagctttggaggatggttctgattaaatctataaagttcccttgattggtaactgattaca-tgtattctattctgatcagGTAATCCTTGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATGGCAGGATCAGAAAATATTGAACAAGCTGGTCAAACTGGATTTGAGGCCA
|| ||| | | || | | ||| || || || | | | | ||| | | | | || || | ||||| ||||||||| |||||||||| || | ||||||||||||||||| ||||| ||||| || ||| ||| |||||||| |||||||| ||||
gtttgttgca--ttcagccaccagcactgtcagcattcat----ttttaaaaaatcaagctttttcacactatgctttgcatctat-agATTATCCTGGATGTCCCAGCTGTGGGAGGAAGGTTGATGCTTGTGGACATGGCTGGATCTGAAAACATAGAAGCAGCAGGTCAAACGGGATTTGAAGCCA
upper sequence: GLYMA10G32610.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G408308_T01 (Zea mays), 3'ss of exon 1
-------------------------------------------------------gtatgtggtagctttggaggatggttctgattaaatctataaagttcccttgattggtaactga---ttacatgtattctattctg-atc---agGTAATCCTTGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATGGCAGGATCAGAAAATATTGAACAAGCTGGTCAAACTGGATTTGAGGCCA
| || | |||| | || | | | || | || | | || || ||| | || | | | || | || ||| || | ||||| ||||||||| |||||||||| | ||||||||||||||||||| ||||| ||||| || ||| || || ||||| |||||||| ||||
gtggaaaaatgaagaactgtgaagagcacactttgcaatgagagaagttcacggagccattgcatggtttgttgcattcaaccaaccatcactttgaacgttcatttttttaaaaccaagatttttacgaggtatactttgcatctatagATTATCCTGGATGTCCCATCTGTGGGAGGAAGATTAATGCTTGTGGACATGGCTGGATCTGAAAACATAGAAGCTGCAGGACAAACAGGATTTGAAGCCA
upper sequence: GLYMA10G32610.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G150984_T02 (Zea mays), 3'ss of exon 2
gtatgtggtagctttggaggatggttctgattaaatctataaagttcccttgattggtaactga---ttacatgtattctattctg-atc---agGTAATCCTTGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATGGCAGGATCAGAAAATATTGAACAAGCTGGTCAAACTGGATTTGAGGCCA
|||| | || | | | || | || | | || || ||| | || | | | || | || ||| || | ||||| ||||||||| |||||||||| | ||||||||||||||||||| ||||| ||||| || ||| || || ||||| |||||||| ||||
-----------gtttgttgcattcaaccaaccatcactttgaacgttcatttttttaaaaccaagatttttacgaggtatactttgcatctatagATTATCCTGGATGTCCCATCTGTGGGAGGAAGATTAATGCTTGTGGACATGGCTGGATCTGAAAACATAGAAGCTGCAGGACAAACAGGATTTGAAGCCA
upper sequence: GLYMA10G32610.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G029134_T01 (Zea mays), 3'ss of exon 1
gtatgtggtagctttggaggatggttctgattaaatctataaagttcccttgattggtaactg-attacatgtattctattctgatcagGTAATCCTTGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATGGCAGGATCAGAAAATATTGAACAAGCTGGTCAAACTGGATTTGAGGCCA
| || || || | | || || || | | || | | | | | | || | | || || | ||||| ||||||||| |||||||||| | ||||||||||||||||||| ||||| ||||| || ||| || || ||||| |||||||| ||||
---gtttgttgcattcaaccaaccatcactttgaacgttcattttttttaaaaccaagatttttacaaggtatactttgcatctat-agATTATCCTGGATGTCCCATCTGTGGGAGGAAGATTAATGCTTGTGGACATGGCTGGATCTGAAAACATAGAAGCTGCAGGACAAACAGGATTTGAAGCCA
upper sequence: GLYMA10G32610.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G14330.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatg--tggtagctttggaggatggttctgattaaatctataaagttcccttgattggtaactgatta-catgtattctattctgatcagGTAATCCTTGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATGGCAGGATCAGAAAATATTGAACAAGCTGGTCAAACTGGATTTGAGGCCA
||| | | | ||| |||| | || || | ||| || | | | ||||| | || || | | | | || | || |||||||| |||||||| || || | | |||||||| |||||||| || || |||||||| || |||||||| || ||||||||||| || |
gtaagaacgatcttcttgattgatgtgtatgcatagctttatgcagcttatctctgttttaacttactagtgtggttgtttctttttgtagATCATACTTGATGTGCCAACTGTTGGGGGAAGATTGATGCTTGTTGACATGGCTGGTTCTGAAAATATAGACCAAGCTGGGCAGACTGGATTTGAAGCTA
upper sequence: GLYMA10G32610.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0049g01350.t01 (Vitis vinifera), 3'ss of exon 2
----gtatgtggtagctttggaggatggttctgattaaatctataaagttcccttgattggtaactgattacatgtattctattctgatcagGTAATCCTTGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATGGCAGGATCAGAAAATATTGAACAAGCTGGTCAAACTGGATTTGAGGCCA
| || | || | | | |||| ||| | | | ||| | | | || |||| | | | | | | | || || |||||||||||||||| ||||||||||| || | |||||||| |||||||| || || ||||||||||| |||||||||||||||||||| || || |
gtctgaatctcttaaaactttatta-ggttatgacaacctttccaaatcttcttgctttataaacttaat-cttctgtgtgcatttgcatagATAATCCTTGATGTCCCTACTGTGGGAGGAAGGTTGATGCTTGTTGACATGGCTGGTTCTGAAAATATTGAGCAAGCTGGTCAAACTGGATTGGAAGCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7588672|gb|AW704462.1|AW704462EST: TTGTTAAAAGCACACTTTGTAATGATAGAAGTTCCAGAAGTCACTGCATG GTAATCCTTGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATG
genomic: TTGTTAAAAGCACACTTTGTAATGATAGAAGTTCCAGAAGTCACTGCATGgtatgtggta ... ttctgatcagGTAATCCTTGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatctataaagttcccttgattggtaactgattacatgtattctattctgatcagGTAATCCTTGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATGGCAGGATCAGAAAATATTGAACAAGCTGGTCAAACTGGATTTGAGGCCA
ttctattct CT-rich tract
tattctatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtggtagctttggaggatggttctgattaaatctataaagttcccttgattggtaactgattacatgtattctattctgatcagGTAATCCTTGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATGGCAGGATCAGAAAATATTGAACAAGCTGGTCAAACTGGATTTGAGGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG