1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttagtttctcatctttttcagttcagtttttgtttaattatgttataatttacttgacattgttttttttttttttcacttcctgatcaaaattactagGTTTTGGTACGGTTTCCAAATGGTGAACGCAAGGAAAGGAGGTTCAACAGCATAGTGACAATTCAATCTTTATATGACTATGTTGACTCACTTGGATGTT
species | Glycine max |
transcript | GLYMA10G31660.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGCTCTGTCTCTTGGTGAAGAACCTGCAAAAGGACCTAATGTTACACAG GTTTTGGTACGGTTTCCAAATGGTGAACGCAAGGAAAGGAGGTTCAACAGCEST: gi|213588158|gb|DB979222.1|DB979222
genomic: AAGCTCTGTCTCTTGGTGAAGAACCTGCAAAAGGACCTAATGTTACACAGgtacagtatc ... aaattactagGTTTTGGTACGGTTTCCAAATGGTGAACGCAAGGAAAGGAGGTTCAACAGC
EST: AAGCTCTGTCTCTTGGTGAAGAACCTGCAAAAGGACCTAATGTTACACAG GTTTTGGTACGGTTTCCAAATGGTGAACGCAAGGAAAGGAGGTTCAACAGCEST: gi|18692934|gb|BM521782.1|BM521782
genomic: AAGCTCTGTCTCTTGGTGAAGAACCTGCAAAAGGACCTAATGTTACACAGgtacagtatc ... aaattactagGTTTTGGTACGGTTTCCAAATGGTGAACGCAAGGAAAGGAGGTTCAACAGC
EST: GAACCTGCAAAAGGACCTAATGTTACACAG GTTTTGGTACGGTTTCCAAATGGTGAACGCAAGGAAAGGAGGTTCAACAGCEST: gi|24205799|gb|BU965052.1|BU965052
genomic: GAACCTGCAAAAGGACCTAATGTTACACAGgtacagtatc ... aaattactagGTTTTGGTACGGTTTCCAAATGGTGAACGCAAGGAAAGGAGGTTCAACAGC
EST: AGCTCTGTCTCTTGGTGAAGACCCTGCAAAAGGGCCCTAATGTTACACAG GTTTTGGTACGGTTTCCAAATGGTGAACGCAAGGAAAGGAGGTTCAACAGCEST: gi|27424905|gb|CA936425.1|CA936425
genomic: AGCTCTGTCTCTTGGTGAAGAACCTGCAAAA-GGACCTAATGTTACACAGgtacagtatc ... aaattactagGTTTTGGTACGGTTTCCAAATGGTGAACGCAAGGAAAGGAGGTTCAACAGC
EST: AAGCTCTGTCTCTTGGTGAAGAACCTGCAAAAGGACCTAATGTTACACAG GTTTTGGTACGGTTTCCAAATGGTGAACGCAAGGAAAGGAGGTTCAACAGCEST: gi|18848437|gb|BM567668.1|BM567668
genomic: AAGCTCTGTCTCTTGGTGAAGAACCTGCAAAAGGACCTAATGTTACACAGgtacagtatc ... aaattactagGTTTTGGTACGGTTTCCAAATGGTGAACGCAAGGAAAGGAGGTTCAACAGC
EST: GAACCTGCAAAAGGACCTAATGTTACACAG GTTTTGGTACGGTTTCCAAATGGTGAACGCAAGGAAAGGAGGTTCAACAGCEST: gi|13240211|gb|BG359520.1|BG359520
genomic: GAACCTGCAAAAGGACCTAATGTTACACAGgtacagtatc ... aaattactagGTTTTGGTACGGTTTCCAAATGGTGAACGCAAGGAAAGGAGGTTCAACAGC
EST: AAGCTCTGTCTCTTGGTGAAGAACCTGCAAAAGGACCTAATGTTACACAG GTTTTGGTACGGTTTCCAAATGGTGAACGCAAGGAAAGGAGGTTCAACAGC
genomic: AAGCTCTGTCTCTTGGTGAAGAACCTGCAAAAGGACCTAATGTTACACAGgtacagtatc ... aaattactagGTTTTGGTACGGTTTCCAAATGGTGAACGCAAGGAAAGGAGGTTCAACAGC
ataatttacttgacattgttttttttttttttcacttcctgatcaaaattactagGTTTTGGTACGGTTTCCAAATGGTGAACGCAAGGAAAGGAGGTTCAACAGCATAGTGACAATTCAATCTTTATATGACTATGTTGACTCACTTGGATGTT
tcctgat putative branch site (score: 3)
ttacttgacattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttagtttctcatctttttcagttcagtttttgtttaattatgttataatttacttgacattgttttttttttttttcacttcctgatcaaaattactagGTTTTGGTACGGTTTCCAAATGGTGAACGCAAGGAAAGGAGGTTCAACAGCATAGTGACAATTCAATCTTTATATGACTATGTTGACTCACTTGGATGTT
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