1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gttttttttttgccacctcaataggatttctattagttttctcagtttttgtctcatcgtgattttgtttttatactagCTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAACATTTTGGAGAATGAATATGTCAAG
species | Glycine max |
transcript | GLYMA10G31310.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAG CTTTCTGATTATGACAAAGAAGGTTCTATTT-GCGTGTTCGTGGAAAGAACEST: gi|193694789|gb|FK634259.1|FK634259
genomic: GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAGgttttttttt ... tttatactagCTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
EST: GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAG CTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAACEST: gi|207817396|gb|GD789357.1|GD789357
genomic: GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAGgttttttttt ... tttatactagCTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
EST: GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAG CTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAACEST: gi|208189229|gb|GD983633.1|GD983633
genomic: GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAGgttttttttt ... tttatactagCTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
EST: GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAG CTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAACEST: gi|9898819|gb|BE607787.1|BE607787
genomic: GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAGgttttttttt ... tttatactagCTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
EST: GGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAG CTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAACEST: gi|208302678|gb|GE097895.1|GE097895
genomic: GGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAGgttttttttt ... tttatactagCTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
EST: GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAG CTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAACEST: gi|208316633|gb|GE115779.1|GE115779
genomic: GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAGgttttttttt ... tttatactagCTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
EST: ACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAAATTAAAGTCGAAGAG CTTTCTGATCATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAACEST: gi|193608468|gb|FK557931.1|FK557931
genomic: ACGGGAAGCAGAACGCGTCAAGCTCAAATTGG-AAATTAAAGTCGAAGAGgttttttttt ... tttatactagCTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
EST: GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAG CTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
genomic: GACGGGAAGCAGAACGCGTCAAGCTCAAATTGGAAATTAAAGTCGAAGAGgttttttttt ... tttatactagCTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAAC
gatttctattagttttctcagtttttgtctcatcgtgattttgtttttatactagCTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAACATTTTGGAGAATGAATATGTCAAG
ttttgttttt CT-rich tract
attttgtttttatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttttttttgccacctcaataggatttctattagttttctcagtttttgtctcatcgtgattttgtttttatactagCTTTCTGATTATGACAAAGAAGGTTCTATTTTGCGTGTTCGTGGAAAGAACATTTTGGAGAATGAATATGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA