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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...accacatcacttagcatcactagtgtcaatgttttgtattgttttgttgttcacattcaatgcattaaatacattccaaatttctcttgttgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCACAACCGTCAGCTTGGTCTTGAAGATGTAATAGTTGAAGAAAAGGAAAGTA

Basic information

species Glycine max
transcript GLYMA10G30970.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213601701|gb|DB980916.1|DB980916
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
EST: gi|193582074|gb|FK536509.1|FK536509
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
EST: gi|213608933|gb|DB974462.1|DB974462
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
EST: gi|193666351|gb|FK608378.1|FK608378
EST:     GGAAGTACTACTACTACTTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
genomic: GGAAGTACTACTACTAC-TAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
EST: gi|207768084|gb|GD739866.1|GD739866
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
EST: gi|254335664|gb|GR847192.1|GR847192
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
EST: gi|193545203|gb|FK503920.1|FK503920
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTTGGTTGAAATTGATGCC
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAA-TTTTGG-TGAAATTGATGCC
EST: gi|193349072|gb|FK318162.1|FK318162
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
EST: gi|193667100|gb|FK608918.1|FK608918
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGT
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGT
EST: gi|208094020|gb|GD894445.1|GD894445
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTG
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTG
EST: gi|193356084|gb|FK322685.1|FK322685
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTA
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTA
EST: gi|208335097|gb|GE132930.1|GE132930
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGG-TACAAA
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAA
EST: gi|207769587|gb|GD740893.1|GD740893
EST:     GTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGGTACAAAAGTATGAAGTTAACTTTGGTGAAATTGATGCCA
genomic: GTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGG-TACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCA
EST: gi|213594127|gb|DB983223.1|DB983223
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
EST: gi|193598184|gb|FK551438.1|FK551438
EST:     GTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
genomic: GTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
EST: gi|208305544|gb|GE106997.1|GE106997
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
EST: gi|13252699|gb|BG363602.1|BG363602
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
EST: gi|214006120|gb|DB988104.1|DB988104
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAGAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
EST: gi|208087841|gb|GD887707.1|GD887707
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGA
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGA
EST: gi|193654148|gb|FK596044.1|FK596044
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
EST: gi|208280350|gb|GE080520.1|GE080520
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
EST: gi|193523615|gb|FK478378.1|FK478378
EST:     TTGGAGGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
EST: gi|208170146|gb|GD968331.1|GD968331
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTAC
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTAC
EST: gi|193488945|gb|FK453310.1|FK453310
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTT
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTT
EST: gi|208110679|gb|GD913199.1|GD913199
EST:     TACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTTAA-TTTGGTGAAATTGATGCCAC
genomic: TACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
EST: gi|207819274|gb|GD792736.1|GD792736
EST:     GTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTTAACTTTGGTGAAATTGATGCCAC
genomic: GTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
EST: gi|208191503|gb|GD993327.1|GD993327
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACGAAAAGTA
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTAC-AAAAGTA
EST: gi|207837667|gb|GD813277.1|GD813277
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTTAA
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAA
EST: gi|207748300|gb|GD719941.1|GD719941
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
EST: gi|193511514|gb|FK470855.1|FK470855
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAA
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAA
EST: gi|193548875|gb|FK505896.1|FK505896
EST:     TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAG                         TCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC
genomic: TTGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCATAAAGgtatggagat ... tgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgttcacattcaatgcattaaatacattccaaatttctcttgttgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCACAACCGTCAGCTTGGTCTTGAAGATGTAATAGTTGAAGAAAAGGAAAGTA
                                   tttctcttgttgcctt  CT-rich tract
                  attaaatacatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
accacatcacttagcatcactagtgtcaatgttttgtattgttttgttgttcacattcaatgcattaaatacattccaaatttctcttgttgcctttcagTCCTTCCTGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGATGCCACAACCGTCAGCTTGGTCTTGAAGATGTAATAGTTGAAGAAAAGGAAAGTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
-ccacatc
- - - - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - acattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattcca