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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatgcctattttcataatagtaatcactataactatacaagtactcactttgaaagcactaacttgagaagatgttggatacattttaatcaatgaaatattgcaatgatacataacataagcttcatttaacatcatactcttggggatatcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAACAGGCTCAGCAGATGTCACAACAACAGCTAATGGCTTCGCGCTCCTCGC

Basic information

species Glycine max
transcript GLYMA10G30650.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17023923|gb|BM094957.1|BM094957
EST:     TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG                         TATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
EST: gi|208239853|gb|GE038155.1|GE038155
EST:     TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG                         TATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACAT
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACAT
EST: gi|7146715|gb|AW508637.1|AW508637
EST:     TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG                         TATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
EST: gi|298167597|gb|HO012860.1|HO012860
EST:     TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG                         TATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
EST: gi|298167848|gb|HO013111.1|HO013111
EST:     TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG                         TATCCCTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
EST: gi|9564353|gb|BE473862.1|BE473862
EST:     TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG                         TATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
EST: gi|298173919|gb|HO017255.1|HO017255
EST:     TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG                         TATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
EST: gi|24136599|gb|BU927109.1|BU927109
EST:     TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG                         TATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
EST: gi|7147015|gb|AW508937.1|AW508937
EST:     TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG                         TATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
EST: gi|298185599|gb|HO030812.1|HO030812
EST:     TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG                         TATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
EST: gi|18040414|gb|BM308708.1|BM308708
EST:     TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG                         TATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
EST: gi|15812875|gb|BI785150.1|BI785150
EST:     TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAG                         TATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA
genomic: TAGCTGCAATAGCTGATTCTCAACCACAACCATCTCCATTGGCTGGTCAGgtacatgcct ... atcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatacataacataagcttcatttaacatcatactcttggggatatcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAACAGGCTCAGCAGATGTCACAACAACAGCTAATGGCTTCGCGCTCCTCGC
                     atttaac  putative branch site (score: 3)
       ataacataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacatgcctattttcataatagtaatcactataactatacaagtactcactttgaaagcactaacttgagaagatgttggatacattttaatcaatgaaatattgcaatgatacataacataagcttcatttaacatcatactcttggggatatcactacagTATCCTTCTAGTGGACTTGTGCAGCAGGGAGCACACTACATGCAGGCTCAACAGGCTCAGCAGATGTCACAACAACAGCTAATGGCTTCGCGCTCCTCGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC