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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggtacaatacaatgagtcagacaacattggtgtcttttatagttttatttggtgttggatgaggttgctatcggtttgtattttgaatgaatgaatgaatgaatagATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGATTGTCGGAAGCTAGCCCAGACACAATTAGAAGGGCGCATGCTATTCATC

Basic information

species Glycine max
transcript GLYMA10G30360.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30360.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM5G813143_T02 (Zea mays), 3'ss of exon 3
gtaagtggtacaatacaatgagtcagacaacattggtgtcttttatagttttatttggtgttggatgaggttgctatcggtttgtattttgaatga--atgaatgaatgaatagATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGATTGTCGGAAGCTAGCCCAGACACAATTAGAAGGGCGCATGCTATTCATC
                                   |||| | |  |     |      || |   | || ||||  |   |   |  | ||    |  || ||||  ||  |||||||||||||| || |||||||||||||| || ||||| |  ||  | || || || || |||||  | || || ||| || |||| |||||| | ||||
---------------------------------gtgtgtatctgttgaccgtgaactatgctttgt-agtttgcatttcatccattctgtgtgacatcatcaatggttgtgtagATGGGAGAGCTCAAGAAGTTGGTTGAAGAAGGGAAAGTGAGGTATGTTGGCTTATCAGAGGCTAGTGCCGATACCATTCGACGGGCACATGCTGTCCATC

upper sequence: GLYMA10G30360.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0030g02020.t01 (Vitis vinifera), 3'ss of exon 3
---------------------------------gtaagtggtacaatacaatgagtcagacaacattggtgtcttttatagttttatttggtg--ttggatgaggttgctatcggtttgtattttgaatgaatgaatg-aatga-atagATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGATTGTCGGAAGCTAGCCCAGACACAATTAGAAGGGCGCATGCTATTCATC
                                  ||| |  |||  |      |          | ||||||  | | |   | || ||||    ||  || |  |  ||| |   ||   ||   |||  ||   || ||| |  |||||||  |||||||| |||||||||| ||| |||||| | || ||||| || || || ||| |||||||||||||||| || ||||| |||||  ||||||
gtgagtgttgtattatattttctttatttttatttaatttttactttttccaaaccatttttgtaatggtgtgatcttttcctctacttggaagtttaaatcatttcactagcacgttcc-ttaaaaatatatatttgcaataatgtagATGGAGGAGCTTAAGAAGTTGGTTGCAGAAGGAAAAATTAAGTACATTGGGTTATCTGAACCTAGCCCAGACACAATAAGGAGGGCTCATGCAGTTCATC

upper sequence: GLYMA10G30360.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0030g01980.t01 (Vitis vinifera), 3'ss of exon 3
---------------------------------gtaagtggtacaatacaatgagtcagacaacattggtgtcttttatagttttatttggtg--ttggatgaggttgctatcggtttgtattttgaatgaatgaatg-aatga-atagATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGATTGTCGGAAGCTAGCCCAGACACAATTAGAAGGGCGCATGCTATTCATC
                                  ||| |  |||  |      |          | ||||||  | | |   | || ||||    ||  || |  |  ||| |   ||   ||   |||  ||   || ||| |  |||||||  |||||||| |||||||||| ||| || ||| | || ||||| || || || ||| |||||||||||||||| || ||||| |||||  ||||||
gtgagtgttgtattatattttctttatttttatttaatttttactttttccaaaccatttttgtaatggtgtgatcttttcctctacttggaagtttaaatcatttcactagcacgttcc-ttaaaaatatatatttgcaataatgtagATGGAGGAGCTTAAGAAGTTGGTTGCAGAAGGGAAAATTAAGTACATTGGGTTATCTGAACCTAGCCCAGACACAATAAGGAGGGCTCATGCAGTTCATC

upper sequence: GLYMA10G30360.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0030g02060.t01 (Vitis vinifera), 3'ss of exon 3
------------------------------gtaagtggtacaatacaatgagtcagacaacat--tggtgtcttttatagttttatttggtgttggatgaggttgctatcggtttgtattttgaatgaatgaatgaat---gaatagATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGATTGTCGGAAGCTAGCCCAGACACAATTAGAAGGGCGCATGCTATTCATC
                               ||  |  ||   | |    | || |    |||  ||| ||  |   |    | |||     |   || |  || |||     || | |    ||  | |   ||||       |||||||| |||||||| ||||||||||||||||||||  | || ||||| ||  | |  ||||||||| |||||||||| || ||||| |||||  ||||||
gttaagtgttacaattttcgtccttctaatctattttttaattttcttcaaatctgtttccataatggagttatccttttgctgattgaagttcaaattattttactaataccttctttaagaaaatattttttgaaattaaggtagATGGGGGAGCTTAAGAAGTTGGTTGAAGAGGGAAAGATTAAGTACATCGGGCTATGTGAAGCTAGCTCAGACACAATAAGGAGGGCTCATGCAGTTCATC

upper sequence: GLYMA10G30360.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0030g01970.t01 (Vitis vinifera), 3'ss of exon 3
gtaagtggtacaatacaatgagtc-----agacaacattggtgtctt----------ttatagttttat-----ttggtgttggatgaggttgctatcggtttg--------tattttgaatgaatgaatgaatga----atagATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGATTGTCGGAAGCTAGCCCAGACACAATTAGAAGGGCGCATGCTATTCATC
|| |||| || | || | |   |      |   ||  || || | ||          || || | ||||     || ||  ||  ||| |||   |||  ||          |   || ||   ||  ||  |  |     |||||||| |||||||||||||||||||||||||  ||| | || ||||| || || || ||||| |||||||||||||| || |||||| ||||  ||||||
gtgagtgttatattatattttctttttttatttaatttttgttttttcaaaccatttttgtaatgttatgatcttttgttctgcttgaagttttaatcatttcactagcacatgccttaaaaatatacatccacaataatgtagATGGGGGAGCTTAAAAAGTTGGTTGAAGAGGAGAAAATTAAGTACATTGGGTTATCTGAAGCCAGCCCAGACACAATAAGGAGGGCGTATGCAGTTCATC

upper sequence: GLYMA10G30360.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0030g02050.t01 (Vitis vinifera), 3'ss of exon 3
gtaagtggtacaatac----------aatgagtcagacaacattggtgtcttttatagt----------tttatttggtgttggatgaggttgctatcggttt----gtattttgaatgaa---------tgaatgaatgaatagATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGATTGTCGGAAGCTAGCCCAGACACAATTAGAAGGGCGCATGCTATTCATC
||||||| |||| |            ||||| |     ||  ||  |    |  ||  |          |||  ||  |  ||  | | |||   ||   |||    |||  ||   | ||         ||    |    ||||||||| |||||||| ||||||||||||||||||||| | || ||||| ||||| || |||||||||||||||||||| || ||||| |||||| ||||||
gtaagtgttacatttttactctttttaatgaattcttaaattttcttcaactccatgttcagaatggacttttctttttactgcttcaagtttacattattttactagtaccttctttaaaagtcttttttgtgcaataacatagATGGGGGAGCTTAAGAAGTTGGTTGAAGAGGGAAAAATTAAGTACATTGGATTATCTGAAGCTAGCCCAGACACAATAAGGAGGGCTCATGCTGTTCATC

upper sequence: GLYMA10G30360.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0030g01990.t01 (Vitis vinifera), 3'ss of exon 3
------------------------------gtaagtggtacaatacaatgagtcagacaacat--tggtgtcttttatagttttatttggtgttggatgaggttgctatcggtttgtattttgaatgaatgaatgaat---gaatagATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGATTGTCGGAAGCTAGCCCAGACACAATTAGAAGGGCGCATGCTATTCATC
                               ||  |  ||   | |    | || |    |||  ||| ||  |   |    | |||     |   || |  || |||     || | |    ||  | |   ||||       |||||||| |||||||| ||||||||||||||||||||  | || ||||| ||  | |  ||||||||| |||||||||| || ||||| |||||  ||||||
gttaagtgttacaattttcgttcttctaatctattttttaattttcttcaaatctgtttccataatggagttatccttttgctgattgaagttcaaattattttactaataccttctttaagaaaatattttttgaaattaaggtagATGGGGGAGCTTAAGAAGTTGGTTGAAGAGGGAAAGATTAAGTACATCGGGCTATGTGAAGCTAGCTCAGACACAATAAGGAGGGCTCATGCAGTTCATC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209724026|gb|BW671620.1|BW671620
EST:     ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACT                         ATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA
genomic: ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACTgtaagtggta ... gaatgaatagATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA
EST: gi|15664769|gb|BI702140.1|BI702140
EST:     ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACT                         ATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA
genomic: ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACTgtaagtggta ... gaatgaatagATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA
EST: gi|151402721|gb|EV272534.1|EV272534
EST:     ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACT                         ATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA
genomic: ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACTgtaagtggta ... gaatgaatagATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA
EST: gi|192300845|gb|FG991167.1|FG991167
EST:     ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACT                         ATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA
genomic: ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACTgtaagtggta ... gaatgaatagATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA
EST: gi|42722877|gb|CK768776.1|CK768776
EST:     ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACT                         ATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA
genomic: ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACTgtaagtggta ... gaatgaatagATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA
EST: gi|298174714|gb|HO014745.1|HO014745
EST:     ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACT                         ATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA
genomic: ATCTCTATTATCCGCACAGGATTGACACAACAGTACCAATTGAGGAAACTgtaagtggta ... gaatgaatagATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttggatgaggttgctatcggtttgtattttgaatgaatgaatgaatgaatagATGGGAGAGCTTAAAAAGTTGGTTGAAGAGGGAAAAGTAAAATACATAGGATTGTCGGAAGCTAGCCCAGACACAATTAGAAGGGCGCATGCTATTCATC
                       tttgtattttgaat  TA-rich tract