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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctgtttttacttccagtcatggtgtgcattcttcttcatctctaaaccctgtactcttcctctctcttttttggccatgaaacctgtaccattgactttattttccatgtgcatttgataacttcttcaatacttggatgactagGTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTTAACAAAGGGGGTCAAATTGGTG

Basic information

species Glycine max
transcript GLYMA10G30220.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30220.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0030g01740.t01 (Vitis vinifera), 3'ss of exon 3
gtaagctgtttttacttccagtcatggtgtgcattcttcttcatctctaaaccctgtactcttcctctctcttttttggccatgaaacctgtaccattgactttattttccatgtgcatttgataactt--cttcaatacttggatga--ctagGTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTTAACAAAGGGGGTCAAATTGGTG
                                       || ||   |  |   || | ||      |||  |     | |||| |  |           |  ||||||  ||| |||| |||    ||  |||  |||  || || |  ||||||||||||||| || ||| |||||||||||||||| |||||||| || || ||||||||||||||||||||||
--------------------------------------tttaatgaattgaatgtggaatcgctgattcttct-----gtcatgcaggcc----------cactattttatatg-gcatctgactgttttccttggatatctgcataaacctagGTGGGTGCAGATAAAAATTTACTTGTGAAGGATCATACTCACACGTTCGTAAACAAAGGGGGTCAAATTGGTG

upper sequence: GLYMA10G30220.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S277_10V6.3 (Physcomitrella patens), 3'ss of exon 3
gtaagctgtttttacttccagtcatggtgtgcattcttcttcatctctaaaccctgtactcttcctctctcttttttggccatgaaacctgtaccattgactttattttccatgtgcatttgataacttcttcaatacttggatgactagGTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTTAACAAAGGGGGTCAAATTGGTG
                                               || ||| | |  | ||     |  | | | | |  |     | |    |    ||  |  || ||  | ||  || |   ||  |   | |          ||||||| ||||| || ||| ||||  | ||||||||||||||||||||| |||||||||| ||  |  |||| |
-----------------------------------------------tagaccatat-tttttagatgcattgtatagactttccgttccgccttagactctcaagctttcaacttcaaatggt--ttttgttggttcgaaccgttacagGTGGGGGCAGACAATAATTTACTACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192300731|gb|FG991113.1|FG991113
EST:     TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAG                         GTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTT
genomic: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAGgtaagctgtt ... ggatgactagGTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTT
EST: gi|193532831|gb|FK492833.1|FK492833
EST:     TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAG                         GTGGGTGCAGAAAACAACCTACTTGTGAAGGATCACACTCACACTTTTGTT
genomic: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAGgtaagctgtt ... ggatgactagGTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTT
EST: gi|213589825|gb|DB969618.1|DB969618
EST:     TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAG                         GTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTT
genomic: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAGgtaagctgtt ... ggatgactagGTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTT
EST: gi|151401347|gb|EV271161.1|EV271161
EST:     TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAG                         GTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTT
genomic: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAGgtaagctgtt ... ggatgactagGTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTT
EST: gi|209717713|gb|BW671531.1|BW671531
EST:     TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAG                         GTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTT
genomic: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAGgtaagctgtt ... ggatgactagGTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTT
EST: gi|209702720|gb|BW652763.1|BW652763
EST:     TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAG                         GTGGGTGCAGAAAACAATCTACTTGTGAAGG
genomic: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAGgtaagctgtt ... ggatgactagGTGGGTGCAGAAAACAATCTACTTGTGAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgactttattttccatgtgcatttgataacttcttcaatacttggatgactagGTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTTAACAAAGGGGGTCAAATTGGTG
                         tgataac  putative branch site (score: 2)
      tttatttt  TA-rich tract