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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcttcagttgcaactacattatttctgttcatcattcacttttgtgcgttttagatcttgtgtagttgaattgtttcttcttcattctgatcttaacttgttttaattgtcaaatagGTATAGGCTAAAGCACAAGAGAGTTAACATCAGAGCAGTGAAGCATTGGTGTAGACAGATCTTGAGCGGACTTCTCTATCTTCATAGTCACGACCCACCG

Basic information

species Glycine max
transcript GLYMA10G30210.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30210.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G04910.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagttcttcagttgcaactacattatttctgttcatcattcacttttgtgcgttttagatcttgtgtagttgaattgtttcttcttcattctgatcttaacttgttttaattgtcaaatagGTATAGGCTAAAGCACAAGAGAGTTAACATCAGAGCAGTGAAGCATTGGTGTAGACAGATCTTGAGCGGACTTCTCTATCTTCATAGTCACGACCCACCG
                                    |  |||| ||| |   | |  |     || ||| ||||    ||||    ||   | | |   ||||||  ||||    |   | || ||||| || |  || |||||||| ||||| |||||  ||||||||||||| ||||| |||||||| ||  | |  |||||||| || || || || || 
----------------------------------gtaagattctcttgtaaacatact----tttctgtcgttg----gttttagtttatctttaacgataacttcatttatggat---acagATATAGACTCAGACATAAGAGAGTGAACATAAGAGCTATGAAGCATTGGTGCAGACAAATCTTGAGAGGCTTACATTATCTTCACAGCCATGATCCTCCT

upper sequence: GLYMA10G30210.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G28080.2 (Arabidopsis thaliana), 3'ss of exon 3
gtaagttcttcagttgcaactacattatttctgttcatcattcacttttgtgcgttttagatcttgtgtagttgaattgtttcttcttcattctgatcttaacttgttt-taattgtcaaatagGTATAGGCTAAAGCACAAGAGAGTTAACATCAGAGCAGTGAAGCATTGGTGTAGACAGATCTTGAGCGGACTTCTCTATCTTCATAGTCACGACCCACCG
                                           |   || |    | |  ||||  |  |  ||||  |||   |    |   |  || |||  | ||| ||  | |||   |||||||||||||| || |||||||| ||||| ||||| || ||| |||||||||||||||| || || ||| |   |||||||||||  || ||||| || 
-----------------------------------------gtaagcttat---ctctctatctcat--aagtgaa--gttctcttgataacttactcataatgtttttatatctttcatgcagGTATAGGCTAAAACATAAGAGAGTGAACATAAGAGCGGTAAAGAATTGGTGTAGACAGATTTTAAGAGGATTAAACTATCTTCATACACATGACCCTCCT

upper sequence: GLYMA10G30210.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0020g03380.t01 (Vitis vinifera), 3'ss of exon 3
-----------gtaagttcttcagttgcaactacattatttctgttcatcattcacttttgtgcgttttagatcttgtgtagttgaa---ttgtttcttcttcattc-tgatcttaacttgttttaattgtcaaatagGTATAGGCTAAAGCACAAGAGAGTTAACATCAGAGCAGTGAAGCATTGGTGTAGACAGATCTTGAGCGGACTTCTCTATCTTCATAGTCACGACCCACCG
             ||||||     ||   | | | || ||| | ||          | |  ||  |||  ||||| |    |||||    |||| |    |   |     || || | ||   || ||| |    ||||||||||||||| |||| |||||||||||||||||| |||||||||||||| ||||||||||| || || || ||||| || || |  ||  | || || 
gtaagtatcatacaagttccatgattatgaatgcctttttttttttttgttcaatttctcttgattttctgatctgggcatgttgagaatttgtgtaaattctgtgagcaattttcattttcatttattttgtggtagGTATAGGCTAAAACACAGGAGAGTTAACATCAGAGCTGTGAAGCATTGGTGCAGACAGATCTTAAGGGGGCTGCTCTACCTCCACAACCATAAACCCCCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193482188|gb|FK445697.1|FK445697
EST:     AGGAACATCAACTTCGTGACTGAAATGTTCACATCCGGTACACTTAGGCA                         GTATAGGCTAAAGCACAAGAGAGTTAACATCAGAGCAGTGAAGCATTGGTG
genomic: AGGAACATCAACTTCGTGACTGAAATGTTCACATCCGGTACACTTAGACAgtaagttctt ... tgtcaaatagGTATAGGCTAAAGCACAAGAGAGTTAACATCAGAGCAGTGAAGCATTGGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttgaattgtttcttcttcattctgatcttaacttgttttaattgtcaaatagGTATAGGCTAAAGCACAAGAGAGTTAACATCAGAGCAGTGAAGCATTGGTGTAGACAGATCTTGAGCGGACTTCTCTATCTTCATAGTCACGACCCACCG
                              ttaacttgttttaatt  TA-rich tract